Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2572 ATGGCATCCCTCCCCAACACCCTTTCCTTCTCCTCCTCCCTCTCCACCACCGCCACTCTCCTCCCATGCCGCCGCTTCGTCGCATTCCCCCGCCGCCGCTTCTCCGTTCAAGCCAAGATCCGTGAAATCTTCATGCCTGCCCTCAGCTCCACCATGACCGAAGGCAAAATCGTCTCCTGGATCAAATCCGAGGGCGACAAGCTCTCCAAGGGTGAAAGCGTTGTCGTCGTTGAGTCCGACAAGGCCGACATGGACGTAGAGACCTTCTACGACGGCATACTGGCCGCCATCGTCGTTGCCGACGGCGAAACTGCCCCCGTCGGAGCCGCCATTGGCCTTCTCGTCGATTCTCCCGAAGAAGTCGCCGAAGCCAAAGCCAAAGCCGCCCAATCTGCTCCTTCTCCCGCCGCTCCCTCCGCCGCCGCTCCCTCTGCCGCTGCTCTGGAGACTACTCCGCCACCTCCTCCTCCGGCAAAGTCCGTTTCTGATGGGCCAAGGAAGACCGTGGCCACGCCTCAGGCTAAGAAGCTCGCAAAGCAGCACAAGGTGGACATTGCGACAGTCGTGGGATCCGGTCCGTTTGGCCGGATTACTCCTGCAGATGTGGAGGCTGCGGCCGGAATAGCTCCGTCGAAGAGCAATGTGTCTCCGCCGGTGAGTCCTGCTCCGGCGGCGCCAACTCCTGCACCGAAATCTGCTGCTGGTTCTGCTGCACCAGCTCCCATTCCGGGTTCGAGTGTTGTTCCTTTCACTACGATGCAATCTGCCGTGGCGAAGAACATGGTGGAGAGTCTATCTGTGCCTACTTTCAGGGTTGGGTACCCTGTGACTACTGATGCATTGGATGCTCTTTATGAGAAGGTGAAACCGAAGGGTGTGACTATGACGGCTATTTTGGCTAAGGCTGCTGCGATGGCACTTGTTCAACACCCTGTTGTCAATGCCACCTGCAAAGACGGTAAGAACTTCGTCTATAACAGTAACATTAATGTTGCTGTTGCCGTAGCAATTAATGGTGGTTTGATTACTCCTGTTCTCCAGGATGCAGATAAGTTGGACTTGTATCTGTTGTCCCAAAAATGGAAGGAACTAGTGGAAAAAGCTCGTGCAAAGCAATTGCAACCTCATGAGTATAATTCAGGAACTTTCACACTTTCCAATTTGGGTATGTTTGGAGTTGACAGGTTTGATGCCATACTCCCACCAGGCCAGGGTGCTATCATGGCTGTTGGAGCGTCTAAGCCCACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGGTGAATGTAACTGCTGATCATCGAATAATATATGGTGCTGACTTGGCCGCATTCCTCCAGACATTCTCAAAAATCATTGAAAACCCAGAAAGCCTGACATTATAG 1401 0.536 MASLPNTLSFSSSLSTTATLLPCRRFVAFPRRRFSVQAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGESVVVVESDKADMDVETFYDGILAAIVVADGETAPVGAAIGLLVDSPEEVAEAKAKAAQSAPSPAAPSAAAPSAAALETTPPPPPPAKSVSDGPRKTVATPQAKKLAKQHKVDIATVVGSGPFGRITPADVEAAAGIAPSKSNVSPPVSPAPAAPTPAPKSAAGSAAPAPIPGSSVVPFTTMQSAVAKNMVESLSVPTFRVGYPVTTDALDALYEKVKPKGVTMTAILAKAAAMALVQHPVVNATCKDGKNFVYNSNINVAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVEKARAKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIIYGADLAAFLQTFSKIIENPESLTL* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2572 466 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 65 94 IPR003016 -
Vra8g2572 466 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 246 465 IPR001078 GO:0016746
Vra8g2572 466 MobiDBLite consensus disorder prediction 125 181 - -
Vra8g2572 466 Pfam Biotin-requiring enzyme 42 111 IPR000089 -
Vra8g2572 466 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 163 206 IPR036625 GO:0016746
Vra8g2572 466 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 6 466 - -
Vra8g2572 466 SUPERFAMILY CoA-dependent acyltransferases 246 465 - -
Vra8g2572 466 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 6 466 IPR045257 GO:0006086|GO:0045254
Vra8g2572 466 Gene3D - 166 206 IPR036625 GO:0016746
Vra8g2572 466 Pfam e3 binding domain 169 203 IPR004167 GO:0016746
Vra8g2572 466 ProSiteProfiles Biotinyl/lipoyl domain profile. 40 115 IPR000089 -
Vra8g2572 466 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 169 206 IPR004167 GO:0016746
Vra8g2572 466 MobiDBLite consensus disorder prediction 210 240 - -
Vra8g2572 466 Gene3D - 241 465 IPR023213 -
Vra8g2572 466 CDD lipoyl_domain 42 114 - -
Vra8g2572 466 Gene3D - 35 140 - -
Vra8g2572 466 SUPERFAMILY Single hybrid motif 39 134 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2572 Vra-Chr8 43690246 43694606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2572 6 466 Acyl Lipid Metabolism Gene Families AT3G25860 73.305 0.0 648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2572 8 43690246 43694606 Vra8g2572 8 43690246 43694606 ECH