Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2566 ATGACCGAATCTCGGAAACAAATGACTCCTAAACTGAGGCAGAAGCCTCATCACTCCCTGCAAGAGTGCAAAGCAACGAGAAAACTGCGTATTATTTATAACGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGGGGTGTTTCACAACACTAAAAAAGCAAAGAGAAACTTTTGTGAGATCCCTCTCCCACCCCTTCCACAAACTTTCACCACTCCTGAAACCAATTCCTTTGAGGTGAATAGCAACAGCAATGCAGTGAGGGTGAAGGTGTGCATTGAAGGTCAACCCCAGACAAAGAAGAGGGTTTTGTCCAAAATCCCATCATCAAGGAGGAGCACTTCTGGAAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGTGACCCTTTTCAGAGTACACGCATATGGCTCGGTACTTTCAACACAGCTGAAGAGGCTTCTCAAGCCTACGAGACCAGAAGGCTTGAGTTTGAAGCCAAGGCCAGAGCCTACAAAAATGTTTCAGAGCCTTTGTCCACAACTTCTGATAAGAGCATATGCTGTAACTCTTCTGATGCTGCTGCTGTGTCTGTGTCTGAGAAGTTTTCTACTACCTCTGATGACTCAGACGGTGTTTTGTCACATCCATCGCCATCTTCTGTCCTTGAGTTGGATTCTTCATCTTCCAAACCCATTGACAATGACAATGTTTTGAGTGAGGAAGCTGTTGAGACTAATAATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCGTCACCATTCAATAGTGCTACTGCTGCCCTTGCTTCTGGGACTGAACCAGACTTTGGTCTTGATTTTGATTGGCTATCACTTGAGGATCATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCGCATTTGTGGGTTTGATAACAACGAGCCTAGTAAACTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCTGGGTGGACCGAGGAGCCCCTCAACATACCTTGTGCCTAA 1050 0.4438 MTESRKQMTPKLRQKPHHSLQECKATRKLRIIYNDPDATDSSDDESGVFHNTKKAKRNFCEIPLPPLPQTFTTPETNSFEVNSNSNAVRVKVCIEGQPQTKKRVLSKIPSSRRSTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYETRRLEFEAKARAYKNVSEPLSTTSDKSICCNSSDAAAVSVSEKFSTTSDDSDGVLSHPSPSSVLELDSSSSKPIDNDNVLSEEAVETNNLVSEFAELEIPDLSLLNLPSPFNSATAALASGTEPDFGLDFDWLSLEDHGQGFDDFGGLEDIRICGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2566 349 PIRSF PTI6 291 334 IPR017392 GO:0003700
Vra8g2566 349 PIRSF PTI6 5 305 IPR017392 GO:0003700
Vra8g2566 349 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 349 - -
Vra8g2566 349 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Vra8g2566 349 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Vra8g2566 349 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Vra8g2566 349 Pfam AP2 domain 118 166 IPR001471 GO:0003700|GO:0006355
Vra8g2566 349 MobiDBLite consensus disorder prediction 204 235 - -
Vra8g2566 349 CDD AP2 118 158 IPR001471 GO:0003700|GO:0006355
Vra8g2566 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 14 349 - -
Vra8g2566 349 MobiDBLite consensus disorder prediction 1 23 - -
Vra8g2566 349 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Vra8g2566 349 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vra8g2566 349 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2566 Vra-Chr8 43624818 43626214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2566 21 348 AP2-EREBP Transcription Factor Family AT1G68550 34.524 2.67e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g2566 AP2 1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2566 8 43624818 43626214 Vra8g2566 8 43624818 43626214 ECH