Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2564 ATGAGTACAGCAAAGAACGCGGCAAACGCGGTTGGAGCCAAAACCGCGAGAGCATGCGACAGCTGCATAACCAAGCGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCTTTGGCTCGCCGACACGAAAGAGTCCGCTTGAAAACGGCGTCCTACAAGTCCACCGACGAACAACAACAACAACCTCCCACGTGGCCCACTAAGAAAGCTCGAACACCCAGACACGGGAAACACTCTCGTAGCAACAACCCCTTCCATCTTGTCCCGGAAGTGGGTTCCGAAGAGGTGAATTCCCATGACGAGAACGAGGAGCAGCTTCTTTACAGGGTCCCCATATTCGAACCTTTTGTTGCCGAGCTATGTGGGAATAACAGCTCTTCTCCTTCTTCGGTGACTTCAACTGATCAAGGAGTAGCAGCTGCTGTGGCCGAAGCCGAAAACAAAGGGGTTGAGAGCAATGTTTTTTATCACGGTAATAATGAGATGGAAAACTTGCACGGGATGCTTCCTTCCGATGCAGAACTTGCCGAGTTTGCGGCTGATGTTGAGAATTTACTGGGTAGGGGGCTTGAAAACGAGTGTGTGGGGATGGAGGATCTGGGACTGATTGATGCGAAGGAGGAGGAGTGTTCGGTGGGTAGTGGGGAGGTGAAGGTGGAAGAAGAAGAGAACCCTGAGATGGAGATGGAGATGGAGATGGTGGGAAGAGATGTATCGTTTGAGTTTAGCTTTGATTACGATACGTGTGAAGAGGTGAAGGAGAAGATTTGCGATTTGGAATTGGGGAAGGAGAAGGGGAATGAAGAAGAACTGAGAGAGAATGATGAGACGAAAAAGAAGAAGATATCGTTGCAGCTTGATTACGAGGCAGTGATTATCGCCTGGGCTAGCCAAAAATCTCCCTGGACCACTCCTGACAAGCCAAACTTGGACCCCGACCAGTGCTGGCACGAATGCATCGAAAGTTATGGAAGGGGAATTCATGATCCTTATGGTGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATTGACGGAGGCAGAGAGGCGAGAGTGTCAAGGTACAGAGAAAAGCGGCGAACAAGGTTGTTCTCTAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGAGCTTCCTTTCCACCATCAACATTTCCCTTGCTAAATCATTAA 1254 0.4928 MSTAKNAANAVGAKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQPPTWPTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSHDENEEQLLYRVPIFEPFVAELCGNNSSSPSSVTSTDQGVAAAVAEAENKGVESNVFYHGNNEMENLHGMLPSDAELAEFAADVENLLGRGLENECVGMEDLGLIDAKEEECSVGSGEVKVEEEENPEMEMEMEMVGRDVSFEFSFDYDTCEEVKEKICDLELGKEKGNEEELRENDETKKKKISLQLDYEAVIIAWASQKSPWTTPDKPNLDPDQCWHECIESYGRGIHDPYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFPPSTFPLLNH* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2564 417 CDD Bbox1_BBX-like 18 61 - -
Vra8g2564 417 Pfam CCT motif 362 404 IPR010402 GO:0005515
Vra8g2564 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 409 - -
Vra8g2564 417 MobiDBLite consensus disorder prediction 66 81 - -
Vra8g2564 417 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vra8g2564 417 Coils Coil 281 301 - -
Vra8g2564 417 MobiDBLite consensus disorder prediction 64 102 - -
Vra8g2564 417 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Vra8g2564 417 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vra8g2564 417 ProSiteProfiles CCT domain profile. 362 404 IPR010402 GO:0005515
Vra8g2564 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2564 Vra-Chr8 43588033 43590092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2564 5 404 C2C2-CO-like Transcription Factor Family AT1G25440 47.255 9.88e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra8g2564 zf-B_box 8.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2564 8 43588033 43590092 Vra8g2564 8 43588033 43590092 ECH