Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2559 ATGAGACCAGAAGGAAACCCGTTAGATCTTAACAATTTGCCTGATGAGTACTCTAGAGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCGGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACACTGAACCAGGCTCGACAACTGGTCTTTCGCAGTGATCATACCCTTGCTGCACAAGGTGCACCTCACTTAGGATGCTGCCAACCGATTGGAACGGGTGGTTATCACCCATCAGGAGATCCATCGGCACCTCTGAGATTTCCGAGGTACTTCTCAGGTTCATCCTCAACTCACATGCCGCCAGCAGCACCGGCACCAGTAGCACCACAGCCATACCTGTATGCCTCACCTACAAGGCCAGTGTCTTTTGGGTCATCACACTTCCCTCATCAGCATGCGGTGAATGATTACTATGTGGGTCATGTGATGAGTGGGAGTCACGGACACTATGTGGGAGGAGGAGGAGGAGGAGAGAGCACAAGCAGTTACACATGCATTGGTGCACCGGTGGGACAAGGTGGTGGGTTTGGCAGTGGTGGTGGTGGTGGTAAGGACGGGTCACTGCCACTGCATAATAATCAGGAGGAAGGGTTGAGTTGGGGAAGGGGGTATCCGGCAGGAGCACAGCATCGTTTGGATCCTCCGTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 801 0.5243 MRPEGNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNQARQLVFRSDHTLAAQGAPHLGCCQPIGTGGYHPSGDPSAPLRFPRYFSGSSSTHMPPAAPAPVAPQPYLYASPTRPVSFGSSHFPHQHAVNDYYVGHVMSGSHGHYVGGGGGGESTSSYTCIGAPVGQGGGFGSGGGGGKDGSLPLHNNQEEGLSWGRGYPAGAQHRLDPPSAINRFQDGF* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2559 266 Gene3D Classic Zinc Finger 29 103 - -
Vra8g2559 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Vra8g2559 266 MobiDBLite consensus disorder prediction 1 46 - -
Vra8g2559 266 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Vra8g2559 266 MobiDBLite consensus disorder prediction 217 266 - -
Vra8g2559 266 MobiDBLite consensus disorder prediction 15 46 - -
Vra8g2559 266 PANTHER ZINC FINGER PROTEIN JAGGED 1 227 IPR045320 GO:0003700
Vra8g2559 266 PANTHER ZINC FINGER PROTEIN JAGGED 1 227 IPR031113 GO:0007275
Vra8g2559 266 SUPERFAMILY beta-beta-alpha zinc fingers 44 97 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2559 Vra-Chr8 43537776 43540557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2559 4 215 C2H2 Transcription Factor Family AT1G13400 42.202 6.91e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2559 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2559 8 43537776 43540557 Vra8g2559 8 43537776 43540557 ECH