Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2556 ATGAGGCTTTCCATACTGCAACCTCAGCCGCAGCGCTGTCACCACCCGATAAAGCGGTGGCCTCGCATGGACGCCTCCTTCCACCGCCGCAAGGACAAGGTCGTTATCATCATGGGGGCCACCGGCTCCGGCAAGTCCCGTCTCTCCATCGACCTCGCCACCCTCTTCCCCGTCTCCGAAATCATCAACTCCGACAAAATGCAAGTCTACCGCGGACTCGACATCACCACCAACAAGATCCCCCTCACGCAGCGCCGTGGCGTCCCCCACCACCTTCTCGGCGACGTCGACCCCTCCCTCCCGGAGTTCTCCCCCGCCGACTTCCGTCGCCGCGCTGCCCACATCATCGACGACATCAGCAGCCGGGATTGCCTCCCCATCGTCGTCGGCGGCTCTAACTCCTTCGTCCACGCGCTTCTCGTGGAAGACTTCCAGCCTGACTCCAACGTCTTCCACGACGCCGAGCGGCTTATATCCTCCGAGTTGAGGTACAAGTGTTGTTTCCTCTGGGTCGACATAGCTTTCCCTGTGCTATCGCAATACTTGTGCCACCGAGTCGACGACATGCTCCAATCGGGGATGGTCCACGAGTTAGCTCAGTTCTTCGACCCCGAGGCTTCCCGTCGAACCGGGTCCGGTCTCAGAAAAGCCATTGGGGTTCCCGAGTTCGACCGCTTTTTTAATATGTACCCACCCTGGGCCGGCCCCGCGGGCCCGGGCGAGGATCCTCTGCGGAAGCGTGCGTACGAGGAAGCGGTGCGGGCGATCAAGGATAACACGTGCGAGTTAGCGGAGCGTCAGATGGAGAAGATCGAACGGTTGAAGTGTGCCGGGTGGGACCTACGGAGGATCGACGCTACGGAAGCGTTTAGGGTGGTGCTGACGTCAGGGTCCAGCAATGGGTCCGATGTATGGGAGAGACAGGTGTTGGAACCAAGCGTGAAGATTGTGAGACGCTTCTTGATGGAGTAG 972 0.6029 MRLSILQPQPQRCHHPIKRWPRMDASFHRRKDKVVIIMGATGSGKSRLSIDLATLFPVSEIINSDKMQVYRGLDITTNKIPLTQRRGVPHHLLGDVDPSLPEFSPADFRRRAAHIIDDISSRDCLPIVVGGSNSFVHALLVEDFQPDSNVFHDAERLISSELRYKCCFLWVDIAFPVLSQYLCHRVDDMLQSGMVHELAQFFDPEASRRTGSGLRKAIGVPEFDRFFNMYPPWAGPAGPGEDPLRKRAYEEAVRAIKDNTCELAERQMEKIERLKCAGWDLRRIDATEAFRVVLTSGSSNGSDVWERQVLEPSVKIVRRFLME* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2556 323 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 25 322 IPR039657 -
Vra8g2556 323 Pfam IPP transferase 159 269 - -
Vra8g2556 323 Pfam IPP transferase 68 145 - -
Vra8g2556 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 205 IPR027417 -
Vra8g2556 323 Gene3D - 31 321 IPR027417 -
Vra8g2556 323 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 175 281 - -
Vra8g2556 323 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 25 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2556 Vra-Chr8 43490635 43493223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2556 163 321 C2H2 Transcription Factor Family AT2G27760 30.939 7.02e-14 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2556 8 43490635 43493223 Vra8g2556 8 43490635 43493223 ECH