Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2551 ATGTCCACAATTGCAAAGAGAGATTTGAGTTCTAATGAGGAAGAGAGTGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGACAGCCTGCTCATTCACTATATTGCTCGTCATGGTGAAGGTCGGTGGAATATGTTAGCCAAGAGTGCAGGGCTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGCTGAATTATTTAAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCGGGAAGAACAGACAATGAGATCAAGAATTATTGGAGAACAAGGGTACAGAAGCAGGCACGCCAACTTAACATTGAGTCTGGAAGCAAGAGATTCATTGATGCCGTGAAGTGTTTTTGGATGCCGAGGTTGCTCCAAAAGATGGAACAGAACAATTCTCCGAGTCCTCACTGTTCCATGACAAGCATGGTGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAACGTCAAGCAGCTTCAATATACCCTCTATGCTTTCATCATCTCCTCCACAAAGGGAATTCATTATGGACGGTGCAAATCATCTTGGTACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCCATATTCACAGCTGCTTGGAATTTCTGAACACCCCAAAAGTCCTCCGAATGTGCTTGAGAACAATGTCTACAGCTATCCAAACCAGGACAACTGCTATGCTGATACCAATAACTATGGCATGGAAGGCCTAAACATGGATCCCCTTTCGGCCATGGGAACTTACGACTTCCCACAGTTTGATTTTCAGAGCGCAGGGAATGGATGGATGTTAGACAGCGTGGAGGATACTACTTTATGGAACATGGATGCTATGTGA 918 0.451 MSTIAKRDLSSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNNSPSPHCSMTSMVNLGNSGEASMSSTSSSFNIPSMLSSSPPQREFIMDGANHLGTMSNPINPSPDSFPYSQLLGISEHPKSPPNVLENNVYSYPNQDNCYADTNNYGMEGLNMDPLSAMGTYDFPQFDFQSAGNGWMLDSVEDTTLWNMDAM* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2551 305 SMART sant 19 69 IPR001005 -
Vra8g2551 305 SMART sant 72 120 IPR001005 -
Vra8g2551 305 MobiDBLite consensus disorder prediction 1 20 - -
Vra8g2551 305 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Vra8g2551 305 Gene3D - 76 118 - -
Vra8g2551 305 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Vra8g2551 305 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vra8g2551 305 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 303 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra8g2551 305 CDD SANT 77 116 IPR001005 -
Vra8g2551 305 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Vra8g2551 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Vra8g2551 305 CDD SANT 22 67 IPR001005 -
Vra8g2551 305 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vra8g2551 305 Gene3D - 17 73 - -
Vra8g2551 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Vra8g2551 305 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 6 303 - -
Vra8g2551 305 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2551 Vra-Chr8 43437554 43439195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2551 15 204 MYB Transcription Factor Family AT1G68320 62.201 1.04e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra8g2551 Myb_DNA-binding 3.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2551 8 43437554 43439195 Vra8g2551 8 43437554 43439195 ECH