Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2550 ATGCCGGCGAAGGACGACAGTTCCGACAAGGAGAAGTGCCTCGATCTCTTTCTGAAGATTGGTTTAGACGAGCGCACAGCTCGAAACACCGTCGCGAACAACAAAGTCACGGCCAATCTCACTTCCGTCATCAACGAGGCTGGTGTTACTGATGGATGCAGTCGAACGGTTGGAAATCTTCTTTATACGGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGTCCAACATTACTACAATACATTGTTTCTTCAAAGGTCAAAACAACTGCACAGTTAGATGCAGCCTTATCATTTCTTGCTACCACGGGCTTGGAGAATCTTGATTTGAAGACATTTGAAGAAGCTTGTGGTGTTGGCATTGAGGTTTCCACAGAAGATATCAAACAAGCTGTCAGTGAAGTTGTTGAGGAGAACAAGGCTACAATTTTGGAGCTTCGCTATCGAACAAATGTGGGTGAGTTGCTTGGCCATGTGCGCAAGAGGCTGCCATGGGGTGACGCAAAAGTTGCCAAGCAACTTGTTGATGCAAAACTATATGAACTACTGGGTGAACGAACAGCAGCAGATGATGAAAAGCCATCTAGAAAGAAGAAGGAGAAACCGGCTAAAGTAGAGGATAAAGCACCTGTTGCCACTCCTGAAAAGTCACCTGAAGAAGATCTTAATCCATATTTAATATTTCCTAACCCAGAGGAAAATTTCAAGGTGCATACTGAGGTGCCTTTTAGTGATGGTAGTATTTTGAGATGTTGTAATACAAGGGCGCTTCTTGACAAACACTTGAAAGCAACAGGTGGAAAAGTTTTGACCCGCTTTCCACCTGAACCAAATGGATATTTGCATATTGGTCATGCAAAAGCTATGTTTATTGATTTTGGATTGGCAAAAGACAGGGATGGAGGTTGTTATCTGAGATATGATGATACAAATCCTGAAGCAGAAAAGAAGGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCATTCAAGATTACTTACACAAGTGATTATTTCCAAGAATTGTATGAATTAGCTGTGGAGCTCATAAAAAAGGGTCATGCGTATGTTGACCATCAGACACCTGATGAGATAAAGGAATATAGGGAGAAGAAGATGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCACTGAAGCTCTTTGAGGATATGAAAAGTGGCCTTGTAGAAGAAGGAAAAGCCACTCTTAGAATGAAGCAGGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCTTATAGAATTAAGTTTACTCCACATCCTCATGCCGGAGACAAATGGTGTATTTATCCAAGCTATGACTATGCTCACTGCATTGTTGATTCTCTAGAGAATATCACACATTCACTGTGTACACTTGAATTTGAGACACGTCGAGCATCATATTATTGGTTGTTGCATGCGTTAGGCATTTACCAGCCTTATGTATGGGAATATTCAAGATTGAATGTCTCTAACACAGTTATGTCGAAGCGTAAGCTGAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACGCCCACTGCAATCAATGCTTTTGTTCGAGGAATTGGAATAACTAGAAGTGATGGCACTTTGATTTCCGTTGAACGCCTTGAATACCATGTTAGGGAAGAATTAAACAGAACAGCTCCTCGTGCAATGGTTGTCCTTCATCCTCTCAAGGTTGTTATTACTAATCTTGAAGCCAACTTAGCTATTGAGGTTGATGCAAAGTTATGGCCTGATGCAAAAGCTGATGATGCTTCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACGTTCGGACTTCCGGATGCAAGACTCGAAAGATTATTATGGTCTAGCTCCTGGGAAATCTGCGATACTCAGATATGCATTTCCGATAAAGTGCACTGAAGTGATTCTAGCTGACGACAATGAGACTATTCTTGAAATTCGAGCTGAGTATGACCCTTCAAAGAAGACAAAGCCTAAGGGGGTTCTCCATTGGGTTTCTCAACCTTCTCCTGGAGTTGATCCACTAAAGGTGGAAGTCAGGTTGTTTGAGAGGCTATTCCTATCAGAGAATCCCGCTGAACTTGACAATTGGCTTGGCGATTTAAACCCTAATTCCAAAGTAATAATTCCGGGTGCTTACGGAGTGTCCTCCCTGCGGAATGCAAAAGTTGGGGACAATTTCCAATTTGAACGATTAGGCTACTTCGTAGTTGACCAGGACTCAACTCCAGAAAAACTTGTTTTTAATAGGACTGTCACTTTAAAGGACAGCTATAGCAAAGGTGGAAAATAG 2382 0.4207 MPAKDDSSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLLYTVATKYPANALPHRPTLLQYIVSSKVKTTAQLDAALSFLATTGLENLDLKTFEEACGVGIEVSTEDIKQAVSEVVEENKATILELRYRTNVGELLGHVRKRLPWGDAKVAKQLVDAKLYELLGERTAADDEKPSRKKKEKPAKVEDKAPVATPEKSPEEDLNPYLIFPNPEENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIKKGHAYVDHQTPDEIKEYREKKMNSPWRDRPISESLKLFEDMKSGLVEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTPTAINAFVRGIGITRSDGTLISVERLEYHVREELNRTAPRAMVVLHPLKVVITNLEANLAIEVDAKLWPDAKADDASAFYKIPFSNVVYIERSDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVSQPSPGVDPLKVEVRLFERLFLSENPAELDNWLGDLNPNSKVIIPGAYGVSSLRNAKVGDNFQFERLGYFVVDQDSTPEKLVFNRTVTLKDSYSKGGK* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2550 793 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 168 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vra8g2550 793 Gene3D - 123 192 IPR042559 -
Vra8g2550 793 PANTHER OS05G0182800 PROTEIN 13 792 - -
Vra8g2550 793 PRINTS Glutamyl-tRNA synthetase signature 273 285 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vra8g2550 793 PRINTS Glutamyl-tRNA synthetase signature 302 315 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vra8g2550 793 PRINTS Glutamyl-tRNA synthetase signature 447 457 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vra8g2550 793 CDD GlnRS_core 269 579 - -
Vra8g2550 793 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 276 287 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vra8g2550 793 SUPERFAMILY Nucleotidylyl transferase 269 583 - -
Vra8g2550 793 TIGRFAM glnS: glutamine--tRNA ligase 270 790 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vra8g2550 793 Gene3D Ribosomal Protein L25; Chain P 702 786 IPR020056 -
Vra8g2550 793 SUPERFAMILY Ribosomal protein L25-like 577 787 IPR011035 GO:0006412
Vra8g2550 793 PANTHER GLUTAMINE-TRNA LIGASE 13 792 - -
Vra8g2550 793 MobiDBLite consensus disorder prediction 189 216 - -
Vra8g2550 793 Pfam tRNA synthetases class I (E and Q), catalytic domain 269 574 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vra8g2550 793 MobiDBLite consensus disorder prediction 189 223 - -
Vra8g2550 793 Gene3D Ribosomal Protein L25; Chain P 581 700 IPR020056 -
Vra8g2550 793 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 577 768 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vra8g2550 793 Gene3D - 7 122 IPR042558 -
Vra8g2550 793 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 173 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vra8g2550 793 Gene3D HUPs 246 580 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2550 Vra-Chr8 43416146 43425838 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2550 8 43416146 43425838 Vra8g2550 8 43416146 43425838 ECH