Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2542 ATGGGAATGGGTTCAAAAATGGAAGGACCGTCTACCCCAGCCAATCGACGTGACCCATACGAGGTATTGTCCGTGTCAAGGGATTCCACCGATCAAGAAATTAAAACGGCGTACAGAAAGCTTGCTCTTAAGTATCACCCTGACAAAAATGCAAGCAATCCTGAAGCTTCGGAGCTATTTAAAGAGGTTGCATATTCTTATAGTATCTTGTCTGACCCAGAAAAGAGAAGGCAGTATGACAGTGCTGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAGATTGATTTGTCTAATCTTGGGACAGTGAACACAATGTTTGCAGCTTTATTCAGTAAACTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTGGAAGAAGCTCTTAACGGAACTGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTAGCGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAACGAACAACAAGCTGAGTCAGGCATTGTAATAAGAGTTACTTCAACAGCACAAAGCAAATTCAAATTGCTCTACTTTGAACAAGATGTGAATGGAGGCTATGGTCTGGCATTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTATAGAATGGATTCAACAGTGAATGCGTTAGCGATGGCTAAGGATCCTGAAGGGGCCTTCTTTAAAAGGTTGGAAGGTCTTCAGCCTTGTGAAGTCTCAGAACTAAAGGCTGGCACTCACATATTTGCGGTTTATGGTGATAACTTCTTTAAGACTGCTAGCTATACTATTGAGGCAGTATGTGCAAAATCGTATGAAGATACCACCCAAAAACTGAAGGATGTTGAAGCTCAGATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCGCGCTATCAGGAAGTGACAGACAGATACACAAAAGAAAAACAATCTGTAGACGAGCTTCTGAAACAAAGGGATGGTATCCATTCTTCCTTCACCATTGTGAAGTCAACCAATGTTAGTGGAAATGGTAGTAATTTTAGCAATGGAAGTTCTAGCAAAATGACTGGTGAAGAGAGCCCCAGTGAAGATGGAGGATCAGATGGGAAGGACAAGTCAGGCAAAAAGAAATGGTTTAACTTGAATATTAGGGGTTCTGATAAGAGGTTGGGTTGA 1233 0.4161 MGMGSKMEGPSTPANRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVIRVTSTAQSKFKLLYFEQDVNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEAVCAKSYEDTTQKLKDVEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQSVDELLKQRDGIHSSFTIVKSTNVSGNGSNFSNGSSSKMTGEESPSEDGGSDGKDKSGKKKWFNLNIRGSDKRLG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2542 410 CDD DnaJ 18 72 IPR001623 -
Vra8g2542 410 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 408 - -
Vra8g2542 410 Coils Coil 288 343 - -
Vra8g2542 410 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 408 - -
Vra8g2542 410 Gene3D DnaJ domain 4 100 IPR036869 -
Vra8g2542 410 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Vra8g2542 410 MobiDBLite consensus disorder prediction 1 28 - -
Vra8g2542 410 MobiDBLite consensus disorder prediction 362 410 - -
Vra8g2542 410 MobiDBLite consensus disorder prediction 380 410 - -
Vra8g2542 410 SMART dnaj_3 17 75 IPR001623 -
Vra8g2542 410 MobiDBLite consensus disorder prediction 362 379 - -
Vra8g2542 410 Pfam DnaJ domain 18 80 IPR001623 -
Vra8g2542 410 PRINTS DnaJ domain signature 20 38 IPR001623 -
Vra8g2542 410 PRINTS DnaJ domain signature 38 53 IPR001623 -
Vra8g2542 410 PRINTS DnaJ domain signature 55 75 IPR001623 -
Vra8g2542 410 PRINTS DnaJ domain signature 75 94 IPR001623 -
Vra8g2542 410 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Vra8g2542 410 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2542 Vra-Chr8 43331076 43337154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2542 11 90 C2H2 Transcription Factor Family AT1G74250 42.353 2.80e-13 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2542 8 43331076 43337154 Vra8g2542 8 43331076 43337154 ECH