Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2539 ATGGCAGCAAGATTCTCTCGCCTTGCTCCTTTTCTGGTTTTTCATTTTCTTCTTCTCACGGTTCAAGGTTCCAGTAACCCAGATTTCGACGCTCTCGTGGCCTTCAAAACCGCTTCAGACACTTCCCAGAAGCTCACAACATGGAACACCAGCAGCACCAGCCCCTGTTCCTGGAGCGGCGTGTCGTGCATTGGCGACCGTGTCTCCCGACTCGTTCTCGAAAACCTTGACCTCCAAGGCTCCATTCATCCCTTGACTTCTCTAACTCAGCTCCGAGTTCTCAGTCTCAAAGGAAACCATTTCTCCGGTCCCGTTCCCGACCTCTCCAACCTCACCGCCCTCAAACTCCTCTTCTTGTCTCGCAACGCCTTCTCCGGCGAGTTTCCGGGGACCGTCACGTCGCTCTTTCGCCTCTACCGACTCGATCTGTCCAACAACAACTTCTCCGGCGAGATTTCGGCGACGGTCTCCCACTTGACCCACCTCCTCACTCTCCGCCTCGACGGGAACAAGTTCTCCGGCCACATTCCTGACTTCAACCTCCCCGACCTCCAAGAATTCAACGTCTCCGGCAACCGCCTCTCCGGCGAGATACCCAAAGCATTATCAAGTTTCCCCGAATCATCGTTCGGGCAAAACCCGTTTCTCTGTGGTGCTCCAGTTAAAAAATGCGCATCCGACCCAACCAAACCCGGATCAGAAGGCGCCATTGCTTCGCCGTTGTTACCACAGAACCATAACAACCCAACACCTACGGTATCATCTTCACCAAGCTCAATGCCAAAAACGTCAACCCCAATGTCAAGCAGTAAAAGCCACGAGAAGGGTGCTTCTAAAATAAGCCCGGTGGCGCTTATAGCTATTATAGTTGGTGATGTTTTGGTTCTTGCAATAGTGTCTTTGCTTTTGTATTGTTACTTCTGGAGAAACTACAAGTTAAAAGAAGGGAAGGGAACGAAGCTTTTTGAGAGTGAGAAGATTGTGTATTCGTCAAGTCCGTACCCTGCTCAGGGAGGGTTTGAGAGGGGTCGCATGGTGTTCTTCGAGGGTGAGAAAAGGTTTGAACTTGAGGACTTGCTGCGAGCATCTGCGGAAATGCTTGGAAAGGGAGGATTTGGGACCGCGTATAAGGCAGTGCTCGATGATGGGAACGTGGTTGCGGTGAAGAGACTGAAGGACGCGCAGATTACAGGGAAGAGGGAATTCGAGCAACACATGGAGGTGTTGGGAAGGTTAAGGCATCCAAATGTCGTTAGTTTGAGAGCTTACTATTTTGCGCGCGAGGAGAAGTTGCTGGTCTATGATTACATGCCCAATGCCACCTTGTTCTGGCTCCTTCACGGGAACCGAGGACCCGGACGAACCCCACTGGACTGGACCACGAGGCTGAAAATAGCAGCGGGAGCGGCGAGAGGTGTGGCTTTCATTCATAACTCGTGCAAGTCCATTAGACTCACCCACGGTAACATCAAATCCACCAACATCTTACTCGACAAGCAGGGCAACGCGCACGTGTCTGATTTTGGGCTCTCGGTTTTCGCGGGGCCAGGCCCATTGGGTGGGAGGCCCAACGGCTATCGCGCGCCGGAAGCATCGGATGGTCGAAAACAGACCCAGAAGTCTGACGTGTACTCTTTCGGTGTGCTCCTGCTGGAGATTCTAACCGGGAAGTGCCCCTCTGTGGTGGAGAGTGCAGGCAGTGCTTACGGTGGGGTGGTGGACCTGCCGAGGTGGGTCCAGTCGGTGGTGAGGGAAGAATGGACCGCTGAAGTGTTTGATTTGGAACTGATGAGGTATAAGGATATTGAGGAGGAGATGGTGGGGTTGCTTCAGATTGCGATGACGTGTACCGCGGCTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTGAAGATGATTGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATGACTCGACGGACTCTGTTTCCGAGTCACCCTCCATGTCTGAAGATGCGTGTGGAACGAGTCAGTGA 2004 0.5329 MAARFSRLAPFLVFHFLLLTVQGSSNPDFDALVAFKTASDTSQKLTTWNTSSTSPCSWSGVSCIGDRVSRLVLENLDLQGSIHPLTSLTQLRVLSLKGNHFSGPVPDLSNLTALKLLFLSRNAFSGEFPGTVTSLFRLYRLDLSNNNFSGEISATVSHLTHLLTLRLDGNKFSGHIPDFNLPDLQEFNVSGNRLSGEIPKALSSFPESSFGQNPFLCGAPVKKCASDPTKPGSEGAIASPLLPQNHNNPTPTVSSSPSSMPKTSTPMSSSKSHEKGASKISPVALIAIIVGDVLVLAIVSLLLYCYFWRNYKLKEGKGTKLFESEKIVYSSSPYPAQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQITGKREFEQHMEVLGRLRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSIRLTHGNIKSTNILLDKQGNAHVSDFGLSVFAGPGPLGGRPNGYRAPEASDGRKQTQKSDVYSFGVLLLEILTGKCPSVVESAGSAYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMTCTAAAPDQRPRMSHVVKMIEELRGVEVSPCHDSTDSVSESPSMSEDACGTSQ* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2539 667 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 653 - -
Vra8g2539 667 Gene3D Phosphorylase Kinase; domain 1 341 436 - -
Vra8g2539 667 Gene3D Ribonuclease Inhibitor 180 225 IPR032675 -
Vra8g2539 667 SUPERFAMILY L domain-like 37 221 - -
Vra8g2539 667 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vra8g2539 667 MobiDBLite consensus disorder prediction 643 667 - -
Vra8g2539 667 MobiDBLite consensus disorder prediction 240 275 - -
Vra8g2539 667 Pfam Protein tyrosine and serine/threonine kinase 365 633 IPR001245 GO:0004672|GO:0006468
Vra8g2539 667 CDD STKc_IRAK 367 637 - -
Vra8g2539 667 SUPERFAMILY Protein kinase-like (PK-like) 365 634 IPR011009 -
Vra8g2539 667 MobiDBLite consensus disorder prediction 228 275 - -
Vra8g2539 667 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Vra8g2539 667 Gene3D Transferase(Phosphotransferase) domain 1 437 654 - -
Vra8g2539 667 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Vra8g2539 667 ProSiteProfiles Protein kinase domain profile. 361 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2539 667 PANTHER - 14 653 - -
Vra8g2539 667 MobiDBLite consensus disorder prediction 646 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2539 Vra-Chr8 43303061 43306369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2539 28 667 Receptor kinase-like Gene Family AT1G68400 67.173 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra8g2539 PK_Tyr_Ser-Thr 9.2e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2539 8 43303061 43306369 Vra8g2539 8 43303061 43306369 ECH