Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2534 ATGCAGAGGTTTCACACCGCGACGTGTATTTATTGTCAGAAAGCGATCTTTGGAAAGTCAAATTCCAAGAAACAAAGTGTTAAACACTTCTACCAGGTCAAGAGTCTGAGGAACCGAGTTCGTCAGCGTGGACCCGGAAATGCAAATGGACACTGTCCGGACTCATTTGATTGTGGAAGTTTGGGAACGTTTTCCTTTCCCTTCACCACCTTTGAATACCCCAACTGTGGTGCTTTGGCAATCAAAGGCTGTAATAATCCTAACAAGACAGCACTGAAGCAAGTCCGGTTGACCAATGGAGGAAAACTTTTACAAGTTACTAACATTGTTCGTTGGAGATGGAAGAGTGAAGTTACCATTAAAGATAACGATTTCCGCAATCTTCTTGAAAGTTCTAATTGTAATGCCTTGAGCTATAATATCACCGTCCCTCCATCCTCCCCTTTCGGTTCTTTTTACCTGAAAAACAATATAACCGCCTTCAATTGCAGCCACCAGAAAAACCGCAACATTTCAAAAGATTTCATCAACTATACTCGATGTCCTTCCTTTGATTTTTACTTTGCCCCTTCATCTTCTGATCAGGACTATCTACGCTCTTTAACCTCCTCATGTTCAATGGTTCAACTTCCCGTCAGACAAGATTTCCAGTTCTTCAAAGACCCATTTGGATTTTTAACTCCTCAAATTACCTTTCAATTCCAGTTTTCAAATGACTGTTCGCAGTGTCAGGGAAGAGGGGGCATTTGCCGACTAGACAGCCACGCAAAGTTATATTGCGCCATGAGGAAAAGTAGAGTTTCGACTCGGAAGCTTGCATTGATGCTAGGTATCGGTCTTGGACCATGGGTCATATTTGGGTTGTTCTTCACGTTACGCTACTGCAAACAGAAGTATGCTCAATCGAGAAACACTTATGGTGATTCCTTCCAAAATCCAGACACAGAGATTGACATGATCTTCTTTGGGGTACCCATCTTCTCGTATAAGGAGCTTCAAGAAGCAACCAACAATTTTGACTTCACTAGAAAGCTCGGAGATGGAGGCTTTGGCATTGTTTACCACGGGACACTGAGAGATGGAAGGGAAGTTGCAATCAAACATCTGTTTGAGCACAATTACAAGAGAGTGGAACAGTTTATGAATGAAATCGAGATCCTTTCTCGCTTGCGCCACAGAAATCTCGTGTCCCTTTATGGCTGCACTTCACGTCACGCCCAAGAGCTGTTGCTTGTGTATGAGTACATTCCAAATGGCACAGTTGCTAGCCATCTCCACGGTGAATTAGCTAGAGTTGGTTTGCTGACATGGCCTATTCGAATGCAAATTGCCATAGACACTGCTACTGCACTCTCCTATCTCCATTCTTCTAACATCGTTCACCGTGATGTGAAAACCAATAACGTTCTGCTTGACATTAATTTTTCCGTTAAGGTGGCAGATTTTGGGCTTTCAAGATTGTTCCCCAATGATGTAAGTCACGTGTCCACAGCTCCGCAGGGATCTCCGGGGTATCTTGATCCTGAATATTTTCAATGTTACAGGCTCACCGATAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTAATGGAGCTAATATCATCCATGCCAGCAGTTGATGCAGCCAGGGAAAGGGATGAAGTTAACTTAGCAAATTTTTTCACGAAAAGGATTCAAAAAGGAAAGCTTCGTGAGCTTGTAGACCCATCCTTTGGATTTGAGTCAGACCAAGTCGTTAAAAGGATGGTGACTGCAGTGGCAGAATTGGCATTTCGGTGTGTGCAGGGAGACAACGAATTGAGACCTTCTATGGACCAAGTTCTGGAATTCCTCAAGAAAATCCAAAGTGGGAATTATGAGTCTGAGAATCCAGAGAAAGGAGATCATGGTGGTAATGTTATCTCGTCTACCTCAACGGAAGAAATGCAACCACCACCGTCAGTTTCACGGAATTCGGGTCAAATTGAAATTTTAATGAATAATAAGCTTTCTTCGCCAAGGTCCTTCACCGGTAAATGGGAAAGTGAATCTACCACGCCCAATGTCAGTGGTTAA 2055 0.4316 MQRFHTATCIYCQKAIFGKSNSKKQSVKHFYQVKSLRNRVRQRGPGNANGHCPDSFDCGSLGTFSFPFTTFEYPNCGALAIKGCNNPNKTALKQVRLTNGGKLLQVTNIVRWRWKSEVTIKDNDFRNLLESSNCNALSYNITVPPSSPFGSFYLKNNITAFNCSHQKNRNISKDFINYTRCPSFDFYFAPSSSDQDYLRSLTSSCSMVQLPVRQDFQFFKDPFGFLTPQITFQFQFSNDCSQCQGRGGICRLDSHAKLYCAMRKSRVSTRKLALMLGIGLGPWVIFGLFFTLRYCKQKYAQSRNTYGDSFQNPDTEIDMIFFGVPIFSYKELQEATNNFDFTRKLGDGGFGIVYHGTLRDGREVAIKHLFEHNYKRVEQFMNEIEILSRLRHRNLVSLYGCTSRHAQELLLVYEYIPNGTVASHLHGELARVGLLTWPIRMQIAIDTATALSYLHSSNIVHRDVKTNNVLLDINFSVKVADFGLSRLFPNDVSHVSTAPQGSPGYLDPEYFQCYRLTDKSDVYSFGVVLMELISSMPAVDAARERDEVNLANFFTKRIQKGKLRELVDPSFGFESDQVVKRMVTAVAELAFRCVQGDNELRPSMDQVLEFLKKIQSGNYESENPEKGDHGGNVISSTSTEEMQPPPSVSRNSGQIEILMNNKLSSPRSFTGKWESESTTPNVSG* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2534 684 CDD STKc_IRAK 345 614 - -
Vra8g2534 684 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vra8g2534 684 Gene3D Phosphorylase Kinase; domain 1 311 415 - -
Vra8g2534 684 Gene3D Transferase(Phosphotransferase) domain 1 416 625 - -
Vra8g2534 684 ProSiteProfiles Protein kinase domain profile. 339 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2534 684 SMART serkin_6 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2534 684 MobiDBLite consensus disorder prediction 630 684 - -
Vra8g2534 684 Pfam Protein tyrosine and serine/threonine kinase 341 611 IPR001245 GO:0004672|GO:0006468
Vra8g2534 684 MobiDBLite consensus disorder prediction 618 684 - -
Vra8g2534 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vra8g2534 684 SUPERFAMILY Protein kinase-like (PK-like) 323 624 IPR011009 -
Vra8g2534 684 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 52 683 IPR044652 -
Vra8g2534 684 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 52 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2534 Vra-Chr8 43263883 43267631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2534 52 684 Receptor kinase-like Gene Family AT1G25390 43.338 9.03e-158 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra8g2534 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2534 8 43263883 43267631 Vra8g2534 8 43263883 43267631 ECH