Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2532 ATGGTCTGGCTTCTTTTTTTCAAATCGCTAATAGTATTTTTGTCACAGCTTTTGCTGATTGTTTCAGCTCAGAATGGAAGGTGTCCACCATATTCGGACTGCGGATTTCTTGGGCGCATTCAGTTTCCTTTCACAACCACCGAGCAACAACACTGCGGCTTGTTGGCTATACATGGCTGTCAACGACTTCCTCCTTCCTCTCGCAAAACTATCAAACTAGGCACCTCCACATCATCCTCGTACTCTGTTTTAAAGGTAGAACCTCGTACCATATTTATCTCAGATGACGAACAACAACGTTATTTGAGAAACAGAAGTTGCAAAGCATTCAGCAAGAATGTTACTCTTCCTGACACCTCTCCTTTAGCTTCTTTCCTCAACAAAAACGGTATCACCATCTTCAGATGCAATCAGTCCCTGAAACCCTCCCTTTCCAAGGATTTTTATAAATATTCAAACTGTTCTGAGTACGAAATCTTCTATGGCCCTCCAAATACACTAACTCCTCCGGGTTTCCAGTGGCCCAGCTCTTTAGCACCATGCTCAACCGTTCAGCTTTCTGTAGACGGAAGTTCTACCGACGACCCCTTTCTATTTGTAATTAGTTCTAGTGTTATTGAAGTTCAGTTATCGAAGGAATGTGAAAGGTGTCTTGGTGATGGAAAAGGACGATGTTCACTTGACATTAAAGGAAAATTCAATTGCAGCACAGAGCGGCGGAATTTGGCATGGAAGTTAGTACTAGGTATTGGAATGTCGGCTACTGTTATCATTGGACTACTAATACTATGGAACCGCAAACCCAGATGTTTGTTTGGTTTCTTTTCAAATCGAAACCCAGTAAGTGCGAGTATCTACTTTGGGGTCCCTGTCTTCACTTATAAGGATCTTGTAATAGCAACAAAAAGTTTTGATCGTTCAAGAGAACTAGGAGAAGGAGGCTTTGGGATTGTTTACTATGGAAAACTCCATGATGGACGTGAAGTTGCTGTGAAGCGGCTATATGAGCACAACTATAGAAGAGTAGAACAGTTCATGAATGAAATCAAGATCCTCACACGCTTGCGCAACAAAAACTTAGTGTCTCTCTATGGCTGCACTTCATATGACAGCCGTGAACTACTGCTTGTTTATGAATACATTTCAAATGGAACTGTGGCCAATCACCTCCATCGTCGTGAATCAACGAATCATGCCTCTTTGCCGTGGCTTATCCGAATGAAAGTGGCCATTGAGACTGCTACTGCATTGGCCTATCTCCATGCCTCTGACATCATTCACCGCGATGTCAAAACCAGCAACATTCTGCTTGACAACACTTTCTGTGTTAAAGTTGCAGATTTTGGATTGTCGAGACTGTTCCCGGTTGATGTCACCCATGTTTCCACTGCTCCACAAGGCACCCCTGGCTATGTTGATCCTGAATATCACCGCTGCTACCAACTTACCAACAAGAGTGATGTGTATAGTTTTGGGGTTGTTCTTATTGAGCTAATATCATCTATGCCAGCAATTGATCTGAACCGACATAAGGATGAAATAAACTTGGCAGATCTAGCAGTAAGGAATATTCATAAAAATGCAATTGCCGAGCTGGTAGATCCTTCCCTTGGTTTTGAGTCAAATGATGATGTTAAAAGACAAATCATTGCAGTAGCAGAATTGGCTTTTCAATGCTTGCAACAGGACAAGGACTTGAGACCCTCCATGGATGAAGTGTTGGAGGTGCTGAAAAGAATAGAAAGTGGGAAGGATGAAGCAGGGCGTGCTCAGGATGAAGAGCCATCATCACCATCTTCAGTAGATCACGATGAAGTGAAATTGTTGATGAATACGAAGTTGCCACCTTCGCCAAGGGCCGTGACAGATAAATGGAACTGTCGCTCTACCAGTCCTAATGTTAGTGGTCAATAA 1914 0.4279 MVWLLFFKSLIVFLSQLLLIVSAQNGRCPPYSDCGFLGRIQFPFTTTEQQHCGLLAIHGCQRLPPSSRKTIKLGTSTSSSYSVLKVEPRTIFISDDEQQRYLRNRSCKAFSKNVTLPDTSPLASFLNKNGITIFRCNQSLKPSLSKDFYKYSNCSEYEIFYGPPNTLTPPGFQWPSSLAPCSTVQLSVDGSSTDDPFLFVISSSVIEVQLSKECERCLGDGKGRCSLDIKGKFNCSTERRNLAWKLVLGIGMSATVIIGLLILWNRKPRCLFGFFSNRNPVSASIYFGVPVFTYKDLVIATKSFDRSRELGEGGFGIVYYGKLHDGREVAVKRLYEHNYRRVEQFMNEIKILTRLRNKNLVSLYGCTSYDSRELLLVYEYISNGTVANHLHRRESTNHASLPWLIRMKVAIETATALAYLHASDIIHRDVKTSNILLDNTFCVKVADFGLSRLFPVDVTHVSTAPQGTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPAIDLNRHKDEINLADLAVRNIHKNAIAELVDPSLGFESNDDVKRQIIAVAELAFQCLQQDKDLRPSMDEVLEVLKRIESGKDEAGRAQDEEPSSPSSVDHDEVKLLMNTKLPPSPRAVTDKWNCRSTSPNVSGQ* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2532 637 ProSiteProfiles Protein kinase domain profile. 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2532 637 Gene3D Transferase(Phosphotransferase) domain 1 381 604 - -
Vra8g2532 637 SUPERFAMILY Protein kinase-like (PK-like) 278 580 IPR011009 -
Vra8g2532 637 MobiDBLite consensus disorder prediction 584 637 - -
Vra8g2532 637 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 4 637 - -
Vra8g2532 637 Gene3D Phosphorylase Kinase; domain 1 279 380 - -
Vra8g2532 637 SMART serkin_6 304 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2532 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vra8g2532 637 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vra8g2532 637 MobiDBLite consensus disorder prediction 584 609 - -
Vra8g2532 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 637 IPR044652 -
Vra8g2532 637 Pfam Protein tyrosine and serine/threonine kinase 307 577 IPR001245 GO:0004672|GO:0006468
Vra8g2532 637 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2532 Vra-Chr8 43253898 43257627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2532 40 636 Receptor kinase-like Gene Family AT1G25390 45.793 3.61e-167 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra8g2532 PK_Tyr_Ser-Thr 7.8e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2532 8 43253898 43257627 Vra8g2532 8 43253898 43257627 ECH