Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2530 ATGATAAACCAAAACGCCCAATTTTTTATCACCAATTCCTACATCATAATCTTCTACCTCCTCGCCCAAATCACTTCTTCTCAAGTCGACCCTAAATTCCTTGCATGTGCACCCAAAACCTGCCCCAACAGCAACCAATCGATAAGCTTTCCTTTTTACATCAAAGGAACGCAAGAACCTTACTGTGGGAGCCCTGGTTTTGAAATCTCTTGTTCTCTACATGGCTTCCCTATCCTCAATCTCTCTCAAACCCAATACCTCATTCATCAAATCTTCTACCAAAACCAGTCCCTGCGACTCTCCAATGCCGCGTTCTCAACTTTCCAATCAAACACCACCACAGGTTGTCTTCTTCCAACTCAGAATCTCACTCTTCCTCCTACTAACGTGTTCCGTGTTGCTCCGAATCAAACAGACATGGTGTTGTTCTACGGCTGTGACGCACCTTCGCTTCACGAACACAGAGTTGGCTGTTCTGCAGAAAACGAGACGAGTTCCGTTTTGGCATTGGATAAAAGAGATGAAAATATAAGCGTTGTGGGAGAGAATTGCAAGGGTGAGGTGGTGGATACGGTTGTGGAAGATGGAATAGGAGGCGTTGCTGAAGCGTTGAGCAAAGGATTTTTGCTGTCGTGGACTGCGAGTAACTGCAGCGTCTGCAACAGCACCGGAGGGAGGTGCGGTTTNGATTCAGATATGTACGNTTTCANGTGTTATTGCACTGACAGAGTTCATTCTGCCAAATGTGGAGCGGATGATCCAGGTCATATAGTATTTTGCAAGCCAAAAACTTTCATTAGTTCACACAGAGAGTGTTTGAAACTGGAAACAGCAGAAAGAAGGAGGGTAGGTGGCAAGAAATTTGAATTGAGTGATTATGACAGCGAACGCGTTTTCTCTCTGGCCTCGTTGACTGGTCACGTTGAAGTAAAGTGTGAACCTAACCGCTTAAAAGGACTTAACATTTCCTTAACCTTTCTTATTATTTCTTACACTCTTTCAACGTCATTTAGACGCCGCGACTGTGGCTTCTTGTCCATACGAAATTGTGATGATTATAATCCGCATGAGCCCAAATCTGTCCAAGTACAAGCAAATGGAAGTTGGGTTCAGGTTGTAAACATACATGAGCTTCTTAGTAGCCCTACTACCCGTCTCACAACTTTTCAATTTAGAGACGAACATTTTTATGACCTTCTGCAGAACCGAAGTTGTGAAGCTTTCACAAACAGTTATACTCTTCCTCTTAAATCTCGCTTTGCTGCTTTTAGATTGGCATACAGCGCAAGTCTGTTCTTGTGCAACAACACCCTCAATGTCACAAATATAAATATGAGCAAGTATAATGGGTGCCTTGGCTACGGTATCTACTACAACCACTTCAATACAGACGAGGATGCGTCTCAGAGTTCTTTGAAAGCGTGTAAAAGGGTCCTGCTTCCAATTAAAGACGTGCCTGACGCCAATGACCCATTTACTTTCTTAACTGGCGATGTCACTGTTACAGTAACATTAACAGATCAATGTTCAGATTGCCACTATCGCAAAGGAGGGCAGTGTCAACTAGACAGCAGAGAGCAATTTTGTTGTGCCAATGCTGCAGCTTCGGAAAAAAGGTCGCGTTGGAAGGTCAAACTGGCTTTAGGTTTAGGCATTGGAGTCCCATGCATGATGTTAATTGGGTTGTTGTTTTTCCTTCTACTCCGCAAACGAAAACATGCTACCTCAGGCGGACAACTGAAGTCAAGAGATTCTTATTCTGATTCCTCCTCGATTTCTTTTCGAGCAAATAGTGCCGAATACTTTGGAGTTCCACTCTTCTCTTACGCGCAGCTTAAAGAAGTGACAAACAATTTCGACCATGCTCAGGAACTTGGAGATGGAGGCTTCGGTACTGTCTACTATGGGAAACTCCCGGATGGAAGGGAAGTTGCGGTGAAGCGGTTATACGAGCACAATTGGAGGCGAGTAGAACAGTTCATGAACGAAGTTAAAATCCTCACAAGGTTGCGTCACAAAAATCTAGTGTCACTCTACGGGTGCACTTCACGGCACAGCCGTGAACTCCTACTTGTGTACGAATACATTTCAAACGGCACCGTAGCATGTCATCTCCACGGTGGATTATCCAAGCCTGGCTTGCTACCATGGCCTACACGTATGAAAATTGCCATAGAAACTGCCACTGCATTGGCTTATCTACACGCCTCAGACATCATCCACCGCGACGTGAAAACAAACAACATTCTCCTGGACAACAACTTCTGTGTTAAGGTAGCAGATTTTGGTCTTTCAAGAGACTTCCCAAACGATGTAACGCATGTCTCCACAGCTCCGCAAGGGTCCCCGGGTTACCTTGACCCTGAATATTATAGCTGCTACCAGCTGACTATTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTGATCTCATCCAAGCCTGCTGTTGATATGAACAGGAGTAGGGATGAGGTTAACTTGTCAAATCTAGCAGTTAGGAAGATTCAAGAAAGTGCAATTAGTGAGCTTGTAGATCCTTGCCTTGGTTTTGATTCGGACAGTAGGGTTAAGGGGATGATAGTTTCAATGGCAGGGTTGGCTTTACAGTGTTTGCAGAGGGAAAAGGAGTTGAGGCCTTCGATGGATGAGGTGTTGCATGAACTGCAGAGAATTGAGAGTGGGAAGGATGAGATAGATGTTGATAACGGAGGAGTTGCAGAAAGTCGTGTACATTCACCACCACCGGCTTCACCGGAGTGGGATGAAGCTGTACTGTTGAAGAACAGGAATCCTACTTCCCCTGACACTGTCACTGATAAATGGGAAAGTAAATGTACTACACCTAATATAAGTGGTTAA 2868 0.4446 MINQNAQFFITNSYIIIFYLLAQITSSQVDPKFLACAPKTCPNSNQSISFPFYIKGTQEPYCGSPGFEISCSLHGFPILNLSQTQYLIHQIFYQNQSLRLSNAAFSTFQSNTTTGCLLPTQNLTLPPTNVFRVAPNQTDMVLFYGCDAPSLHEHRVGCSAENETSSVLALDKRDENISVVGENCKGEVVDTVVEDGIGGVAEALSKGFLLSWTASNCSVCNSTGGRCGXDSDMYXFXCYCTDRVHSAKCGADDPGHIVFCKPKTFISSHRECLKLETAERRRVGGKKFELSDYDSERVFSLASLTGHVEVKCEPNRLKGLNISLTFLIISYTLSTSFRRRDCGFLSIRNCDDYNPHEPKSVQVQANGSWVQVVNIHELLSSPTTRLTTFQFRDEHFYDLLQNRSCEAFTNSYTLPLKSRFAAFRLAYSASLFLCNNTLNVTNINMSKYNGCLGYGIYYNHFNTDEDASQSSLKACKRVLLPIKDVPDANDPFTFLTGDVTVTVTLTDQCSDCHYRKGGQCQLDSREQFCCANAAASEKRSRWKVKLALGLGIGVPCMMLIGLLFFLLLRKRKHATSGGQLKSRDSYSDSSSISFRANSAEYFGVPLFSYAQLKEVTNNFDHAQELGDGGFGTVYYGKLPDGREVAVKRLYEHNWRRVEQFMNEVKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLSKPGLLPWPTRMKIAIETATALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDFPNDVTHVSTAPQGSPGYLDPEYYSCYQLTIKSDVYSFGVVLIELISSKPAVDMNRSRDEVNLSNLAVRKIQESAISELVDPCLGFDSDSRVKGMIVSMAGLALQCLQREKELRPSMDEVLHELQRIESGKDEIDVDNGGVAESRVHSPPPASPEWDEAVLLKNRNPTSPDTVTDKWESKCTTPNISG* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2530 955 Gene3D Transferase(Phosphotransferase) domain 1 696 910 - -
Vra8g2530 955 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 34 260 IPR044652 -
Vra8g2530 955 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 329 954 IPR044652 -
Vra8g2530 955 MobiDBLite consensus disorder prediction 932 955 - -
Vra8g2530 955 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 329 954 - -
Vra8g2530 955 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 34 260 - -
Vra8g2530 955 SMART serkin_6 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2530 955 ProSiteProfiles Protein kinase domain profile. 619 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2530 955 Pfam Protein tyrosine and serine/threonine kinase 622 890 IPR001245 GO:0004672|GO:0006468
Vra8g2530 955 Pfam Wall-associated receptor kinase galacturonan-binding 36 101 IPR025287 GO:0030247
Vra8g2530 955 SUPERFAMILY Protein kinase-like (PK-like) 594 891 IPR011009 -
Vra8g2530 955 Gene3D Phosphorylase Kinase; domain 1 593 695 - -
Vra8g2530 955 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Vra8g2530 955 MobiDBLite consensus disorder prediction 899 955 - -
Vra8g2530 955 CDD STKc_IRAK 625 894 - -
Vra8g2530 955 Pfam Wall-associated receptor kinase C-terminal 166 242 IPR032872 -
Vra8g2530 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2530 Vra-Chr8 43236332 43244918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2530 342 955 Receptor kinase-like Gene Family AT1G25390 46.440 2.83e-166 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra8g2530 PK_Tyr_Ser-Thr 8e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2530 8 43236332 43244918 Vra8g2530 8 43236332 43244918 ECH