LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g2521	ATGTTCCCTTTTGTTTTGTTGTTTTACTTTTTCCTTCTTTGCTGCTACTCTATTGCACCTTTGGTGCATTCTCTGAATGCCGAAGGCTCCGTGCTTTTGACACTAAAGCAGTCGCTCACAGACCCTCAAGGCTCCATGAGTAACTGGAATTCCTCTGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAGAATGTTGTGTCCATCAGCATCCCGAAGAGGAAACTCTCTGGCTCTCTCCCTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAACTTCAGGAACAACAAGCTTTTCGGAGACTTGCCTACACAGCTCTTTCAAGCTCAGGGACTGCAAAGCTTGGTGCTTTATGGTAATTTATTTTCTGGGCCTGTTTCTAGTGAGATTCAGAATCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTTAACGGGTCATTGCCTGCTGCAATTGTCCAATGTAAGAGACTCAAGTCCCTTGTTCTCAGTCAGAACAATTTTTCTGGCCCCTTGCCAGATGGGTTTGGCACTGAATTATCTTCTCTGGAAAGACTAAACCTTTCTTTCAATCACTTCAATGGGTCAATTCCCAGTGATTTGGGAAATCTGTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTCAGTGGTTCAATTCCAGCCAGCCTTGGTAATCTGCCTGAGAAGGTTTACATTGATCTTACTTTCAACAATTTAAACGGTCCAATTCCTCAGAATGGTGCTTTGATGAACAGAGGACCAACTGCCTTTATTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATTCATGCGGTCCTGATACTCCATCTGCTAGTTCACCTCCATCGTTTCCATTTATTCCAAATAACAGTTCGGCTGAGGGTTCCATGGGAAGTGAGAAAAATAAAGGGCTAAGTACGGGAGCTGTGGTTAGCATTGTTGTGGGTGATATAATTGGAATTTGCCTCTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTTGATGAAGATGGAATTAACAAGGGAAGCAAAGGGAGGAAAGAGTGTTTCTGTTTCAGAAAGGATGAATCCGAGGCCCTGTCTGATAATAATGTTGAGCAATATGATCTTGTCCCATTAGATTCCCATGTGACTTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTTTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACCGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATATCCAACGGAAGCCTTGATACAGCAATTCATGGGAAGGCTGGACTTCTGACATTTGCACCACTTTCTTGGTCCTATCGATTGAAGATCATGAAAGGAACCGCAAGAGGATTGGTCTATCTGCATGAATTTAGCCCCAAAAAATATGTACATGGAGACCTGAAGCCAAGTAACATACTTCTTGGACACGACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCTGGAGGGTCGCCAACCTTGCAATCCAACCGAGTGGTTGCAGAGAAACAACATGGAAGACAAAAGAGCATCTCCACTGAAGTCACTACCGGTGTGATGGGAAACGGTTATATGGCTCCAGAAGCACTGAAAGTTGTGAAGCCATCACAGAAATGGGATGTTTACTCATATGGAGTGATGTTGTTGGAAATGATCACAGGAAAACCATCCATTGTCCAGTTGGGGAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGAGGAAAAGAAGCCACTCGTGGAGGTGTTAGACCCTTACTTGGCTGATGATGCAGATAAGGAGGAGGAGATTATCGGAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACGATGAGGCACGTGCTTGATGTTTTGGATAGATTGACTATTTCCTCTGATTGA	2130	0.4366	MFPFVLLFYFFLLCCYSIAPLVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQNVVSISIPKRKLSGSLPSSLGSLSQLRHVNFRNNKLFGDLPTQLFQAQGLQSLVLYGNLFSGPVSSEIQNLRYLQTLDLSQNFFNGSLPAAIVQCKRLKSLVLSQNNFSGPLPDGFGTELSSLERLNLSFNHFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTFNNLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGPDTPSASSPPSFPFIPNNSSAEGSMGSEKNKGLSTGAVVSIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDEDGINKGSKGRKECFCFRKDESEALSDNNVEQYDLVPLDSHVTFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYISNGSLDTAIHGKAGLLTFAPLSWSYRLKIMKGTARGLVYLHEFSPKKYVHGDLKPSNILLGHDMEPHISDFGVGRLANIAGGSPTLQSNRVVAEKQHGRQKSISTEVTTGVMGNGYMAPEALKVVKPSQKWDVYSYGVMLLEMITGKPSIVQLGNSEMDLVQWIQFCIEEKKPLVEVLDPYLADDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDVLDRLTISSD*	710

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g2521	709	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	529	541	IPR008271	GO:0004672\|GO:0006468
	Vra8g2521	709	SUPERFAMILY	Protein kinase-like (PK-like)	410	701	IPR011009	-
	Vra8g2521	709	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	8	708	-	-
	Vra8g2521	709	Pfam	Leucine rich repeat N-terminal domain	26	64	IPR013210	-
	Vra8g2521	709	Gene3D	Phosphorylase Kinase; domain 1	373	480	-	-
	Vra8g2521	709	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	8	708	-	-
	Vra8g2521	709	CDD	STKc_IRAK	411	704	-	-
	Vra8g2521	709	MobiDBLite	consensus disorder prediction	295	310	-	-
	Vra8g2521	709	Gene3D	Ribonuclease Inhibitor	19	77	IPR032675	-
	Vra8g2521	709	Gene3D	Ribonuclease Inhibitor	78	285	IPR032675	-
	Vra8g2521	709	SMART	LRR_typ_2	187	211	IPR003591	-
	Vra8g2521	709	SMART	LRR_typ_2	138	162	IPR003591	-
	Vra8g2521	709	SMART	LRR_typ_2	90	114	IPR003591	-
	Vra8g2521	709	SMART	serkin_6	410	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2521	709	Gene3D	Transferase(Phosphotransferase) domain 1	481	708	-	-
	Vra8g2521	709	SUPERFAMILY	L domain-like	27	278	-	-
	Vra8g2521	709	Pfam	Protein kinase domain	411	698	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2521	709	ProSiteProfiles	Protein kinase domain profile.	405	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g2521	709	MobiDBLite	consensus disorder prediction	281	310	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g2521	Vra-Chr8	43146981	43149780	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g2521	6	709	Receptor kinase-like Gene Family	AT2G01210	66.620	0.0	966

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Vra8g2521		Pkinase	7.3e-33	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra8g2521	8	43146981	43149780	Vra8g2521	8	43146981	43149780	ECH