Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2517 ATGGAGGCGCAACCGCCAACACCCTCGACTGCGCCGCCACCTCCGCCGCCACACCTCAGTTATCCTGACTCGGTCGAATCCTCGCCACGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTTGCGCCGGCGTCGTCCAAGCTACGTCTGATGTGCAGCTACGGTGGACATATCGTTCCTCGTCCACACGATAAGTCCCTCTGTTACGTTGGCGGCGACACGCGCATCATCGTTGCGGAACGCGCTACTTCACTCGCGGACCTCTCCACGCGCCTCTCAAAGACTTTCCTGAACGGACGGACCTTTACGCTGAAGTACCAACTTCCCAACGAGGACCTCGATTCTCTCATCTCTGTCACCACCGATGAAGACCTGGAGAACATGATTGATGAGTATGACCGCACCGCCGCCGCGGCCACCTCCGTCGTCAAACCTTCCCGCATCCGCCTCTTTCTCTTCCCCACCAAACCCGATTCCACTCACTCCATTCCCCCCCAAATTCTCGACACCTCGACCAAATCGGACGACTGGTTCTTGAATGCCCTAAACGGCAACGGAGTACCTAACCGAGGGTTTTCGGACTCTGCTTCTGTTAATTGCCTCGTTGATCTCGACGACGAGGTTGCCGGGAACAACCTCGAACCCGGTTCCAAGGACGTTGGGGAAGGTGGTGCTGGTGCTGGTGTTGGTGGAGGTGCTTCTTTGGGTGGATCTTTCGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCATCGTTTGGGTCCACGTCGTCGTCACCGTCGCTCGCCAATTTGCCTCCGATTAGGGTTCATGTCGTGGAGGATCAGAAGGTAATGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGAGTGGGGCAGAAGCAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCGCCTCCGCCAGTCCCGGCAACGCTCGCCGCCGTGGGTGTACCGATTGGCCCACCGACGATTGTCGCAGGGGATTATCACAACCGGGTTGTCTCTGATGATGAGAGATCCGATCATGGGGTTCCTGTCGGGTATAGAAAGCCTCCCACTCCTCAGCCACAAGTACAGACGCAAGCGCAGTCACAAACACAAACCCTTGCTCCTCAGTTTCAACAGAAGTCAACTGGTGGTAGCGGCGGTGTTGTTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAACGCAATTTCGCGTCAGAAACCTGCTGTTTATCAAGAACAAGTTCAGATTCAATCTGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTCAATGTTTCTGATCCGCACGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTACAACAGCAATTTGAACAGCATCAGCAGACGCAGCAGTTGCCACAACAGCAATTCGAGCAGCACCAGCAAGCGCTGCCACAACAGCAGCAACAATTTATTCATGGCACACATTTCATCCACCATAACCCTGCAATTTCTGCGTATTATCCTGTATATCCTTCCCAGCAACATCCACAGCATCCACAGCAGCCACAGCTTTACTATGTTCATGCGAGGCAACCGCAGGCCTACAACCTACCTGTGCAGCAGGCTAATATGGGTGACTCTGCTGGAAATCTTGCTTCTAGCCGCCCACAAACTCCACCAAATCCTGCTACACTGGTTCCACAATCTGCTGGATACAATCCCATGAGAAATACTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCCGCAACCGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTATGTCACTTACTCACAGATTCATCATCCATCTCAGTCCATGGCTCCTAATTCTGCTCCCCAGGCGAATTATGGTTTTGATTATGCTGACCCTGCTCATGCTCAAATATACTACTCTCAACCCTTGGCACCTACAATGCCTTCCCAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCGGACAATTTGAAGCAGCAGATAAGAACCTCACAACCATTATAA 2106 0.5309 MEAQPPTPSTAPPPPPPHLSYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRTFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSVVKPSRIRLFLFPTKPDSTHSIPPQILDTSTKSDDWFLNALNGNGVPNRGFSDSASVNCLVDLDDEVAGNNLEPGSKDVGEGGAGAGVGGGASLGGSFGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGVGQKQQDEGFVLLSSPPPPPVPATLAAVGVPIGPPTIVAGDYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQTQAQSQTQTLAPQFQQKSTGGSGGVVDLPSPDSVSSDSSLANAISRQKPAVYQEQVQIQSGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQTQQLPQQQFEQHQQALPQQQQQFIHGTHFIHHNPAISAYYPVYPSQQHPQHPQQPQLYYVHARQPQAYNLPVQQANMGDSAGNLASSRPQTPPNPATLVPQSAGYNPMRNTPMPKTEMNAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAPQANYGFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQEGSAQHPSDNLKQQIRTSQPL* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2517 701 MobiDBLite consensus disorder prediction 1 40 - -
Vra8g2517 701 Gene3D - 67 153 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 24 40 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 555 583 - -
Vra8g2517 701 PANTHER EXPRESSED PROTEIN 10 692 - -
Vra8g2517 701 PANTHER OS05G0427100 PROTEIN-RELATED 10 692 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 472 492 - -
Vra8g2517 701 SUPERFAMILY CAD & PB1 domains 63 163 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 680 701 - -
Vra8g2517 701 CDD PB1_UP2 51 153 - -
Vra8g2517 701 Pfam PB1 domain 63 154 IPR000270 GO:0005515
Vra8g2517 701 MobiDBLite consensus disorder prediction 366 442 - -
Vra8g2517 701 SMART PB1_new 62 155 IPR000270 GO:0005515
Vra8g2517 701 MobiDBLite consensus disorder prediction 252 273 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g2517 701 ProSiteProfiles PB1 domain profile. 47 155 IPR000270 GO:0005515
Vra8g2517 701 MobiDBLite consensus disorder prediction 243 273 - -
Vra8g2517 701 MobiDBLite consensus disorder prediction 348 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2517 Vra-Chr8 43118400 43121059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2517 44 262 MAP Kinase Kinase Kinase AT1G79570 32.456 1.65e-23 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2517 8 43118400 43121059 Vra8g2517 8 43118400 43121059 ECH
Vra8g2517 8 43118400 43121059 Vra1g0647 1 7531356 7534162 ECH