Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2507 ATGGCACCAAACACACTCGCCTCAACCATTACTACTATAAAATCTCTTCTGCCACTTCTCTCTCTCTCTCTCAAATCGCTTTCTCTTTCTAAAATCTCTTCAGTCCTCGACAGAAGCTCAAGCCAACAGCGAGAATCGAGAAAAATGCTTAATAAGGACGCTTGCTCTCCCTCCTCCAACGGCGGATTCGGCCCCGCTGCCGTCTCTGGTCAATTGCCGTCAAACGGAGGCTACGGTTCACTGTACTCAGCTCTGTCGAACGATAACCTTCCTTCGCTCTCCGCGAACTGCAGCAACGGAGGCGGCGTTTCGCTGTACCCGTACTCCGACTCAACAACTCAGTATGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGCCTGAATCGCCTGGTGGAGACTTCCAAAGAGGTGGATGCTCTGAGGCAGGAGAACGGTCAGCTCCGGGCAGCAAACAAGGAGCTGCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAGTCAGTACGCCGCCGCCGGCAGTGGATCCTCCGGCCAGACTCAACCGACGCTGTTCGACGTCTTGCATGGCTTCCGTAGCCTCCACATTGGGGAAGGCAAAGAGAATTATGCCGATTGGAATAACAACAATAATCATAATCACAACAATATTTTGAATAATAATAATAACAAGGACTTGCAGGAAGCGTCGGACGAGAGTCCGACGAGCGTGATGGAGAATAACGTGGTGGAGGTTGAGAGATTCTCGCTCCCTAAGAGCATATCTGTGAGGTCCAATGGCTACTTGAAGATGGCTCAGACTGCTGCTGTTACCACCAATAATAGTGCAACTCGCAATAAAAGTGCCACTCGCCCACGCGCCACCGCAACTCCACCTGAAGCCGTTAAGGTGTATGTTCGGGGAGGGCAGAAAGAGGAAGAGCCTCTGGAAATGGTAGTGTACAACCAAGGGATGTTCAAAACTGAGCTGTGTAATAAGTGGCAGGAAACCGGAACATGCCCATACGGAGACCACTGCCAATTTGCTCACGGTATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCGGGGGTCGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCGAGAACAATGAAGCTGGAAAGATAA 1236 0.5186 MAPNTLASTITTIKSLLPLLSLSLKSLSLSKISSVLDRSSSQQRESRKMLNKDACSPSSNGGFGPAAVSGQLPSNGGYGSLYSALSNDNLPSLSANCSNGGGVSLYPYSDSTTQYDSCVIQKHQDMVNRQSMCLNRLVETSKEVDALRQENGQLRAANKELQKQLHLVIQASLESQYAAAGSGSSGQTQPTLFDVLHGFRSLHIGEGKENYADWNNNNNHNHNNILNNNNNKDLQEASDESPTSVMENNVVEVERFSLPKSISVRSNGYLKMAQTAAVTTNNSATRNKSATRPRATATPPEAVKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2507 411 SUPERFAMILY CCCH zinc finger 360 394 IPR036855 GO:0046872
Vra8g2507 411 SMART c3hfinal6 326 353 IPR000571 GO:0046872
Vra8g2507 411 SMART c3hfinal6 364 391 IPR000571 GO:0046872
Vra8g2507 411 Coils Coil 137 164 - -
Vra8g2507 411 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 352 IPR000571 GO:0046872
Vra8g2507 411 ProSiteProfiles Zinc finger C3H1-type profile. 326 354 IPR000571 GO:0046872
Vra8g2507 411 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 95 401 - -
Vra8g2507 411 MobiDBLite consensus disorder prediction 36 59 - -
Vra8g2507 411 ProSiteProfiles Zinc finger C3H1-type profile. 364 392 IPR000571 GO:0046872
Vra8g2507 411 PANTHER CCCH ZINC FINGER/TIS11-RELATED 95 401 IPR045877 GO:0003729
Vra8g2507 411 SUPERFAMILY CCCH zinc finger 323 358 IPR036855 GO:0046872
Vra8g2507 411 Gene3D - 321 359 - -
Vra8g2507 411 Gene3D - 360 396 - -
Vra8g2507 411 MobiDBLite consensus disorder prediction 218 240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2507 108 406 C3H Transcription Factor Family AT1G68200 48.701 1.84e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g2507 zf-CCCH 3.5e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2507 8 43029081 43032452 Vra8g2507 8 43029081 43032452 ECH