Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2500 ATGAGAACAATGGTTGCCACTTTCTCATATCCAGCTTCTACCTACTTTGTTAGGTCTTGTTCCATGAGAGAAAACTATGACCAACTTAAGCAGCCAGTGAACACCGGCATCAGAACTAATGGGAGTTTTAGGTCGCCAATTAAAGTTGAGACACTAGGCCAAATACCTGCAACTACTTCCACCACTCTCGGTCAAGCTGTTACAATTGATGAAAATTGTCTGCGCCAAAACATCCCAACAAAGAAGAAAATGGTTGATCCTCATCGTCAAGGGCTCATCACTGAAGGTGGAGTTGGTTATAGACAGACCATTGTCATTAGGTCCTATGAAGTTGGAGCTGATAAAACCGCCACGCTTGAGAGCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTTTGGATGTCTGGGCTGCTGGGTGATGGGTTTGGGGCGACACACGGAATGGTGAGGAACGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTCTGATTGATTACTATCCCATCTGGGGAGAGGTAGTTGAAATTGACACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGCCAAGCCACAGGCCACATTTTTGCACGTGCGACAAGCACGTGGGTGATGATGAATCGCAAAACAAGACGTCTCTCCAAGATGCCAGAAGAGGTGAGAGCAGAGGTTGCACCTTGGTTTATAGAGAAGCAAGCAATAAAGGAAGATGCTCAAGAAAAAATAGTCAAATTGGATAAAGAGGCTAAATACATGAATTCTGATTTGAAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATAATGTGAAGTATGTAAGATGGATGCTAGAGACCATCCCAGACCAAATTCTGGAGGGGCACCAATTATCTAGTATCACACTGGAGTACAGAAGGGAGTGTGGAAGCTCAGATATTGTTCAATCATTATGTGAACCAGAAGATGATGAAATACTTCATGGTGTGGTAGAGCCAGATTACTGCACAAATCTTCTCAATGGGTTATCATCAGATATTGTAAATGGTAGTGGAGTGCTGACTTACCTTGAGCAGAGGCCATTAAGGTATACACACCTTCTACAAATCAGAGGAGACAAACAAAACGACGAAATTGTCAGAGGAAGGACAACATGGAAGAGGAAGATTGTTACAATGCCATTTTCCACTTAG 1203 0.4339 MRTMVATFSYPASTYFVRSCSMRENYDQLKQPVNTGIRTNGSFRSPIKVETLGQIPATTSTTLGQAVTIDENCLRQNIPTKKKMVDPHRQGLITEGGVGYRQTIVIRSYEVGADKTATLESILNLLQETALNHVWMSGLLGDGFGATHGMVRNDLIWVVSRMQVLIDYYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNRKTRRLSKMPEEVRAEVAPWFIEKQAIKEDAQEKIVKLDKEAKYMNSDLKPKRSDLDMNQHVNNVKYVRWMLETIPDQILEGHQLSSITLEYRRECGSSDIVQSLCEPEDDEILHGVVEPDYCTNLLNGLSSDIVNGSGVLTYLEQRPLRYTHLLQIRGDKQNDEIVRGRTTWKRKIVTMPFST* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2500 400 Coils Coil 244 264 - -
Vra8g2500 400 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 16 394 - -
Vra8g2500 400 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 99 246 IPR029069 -
Vra8g2500 400 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 260 397 IPR029069 -
Vra8g2500 400 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 16 394 IPR045023 GO:0006633|GO:0016297
Vra8g2500 400 CDD 4HBT 100 216 - -
Vra8g2500 400 Pfam Acyl-ACP thioesterase 99 390 IPR002864 GO:0006633|GO:0016790
Vra8g2500 400 Gene3D Hotdog Thioesterase 92 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2500 Vra-Chr8 42930544 42933842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2500 84 400 Acyl Lipid Metabolism Gene Families AT1G08510 47.799 4.49e-100 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2500 8 42930544 42933842 Vra8g2500 8 42930544 42933842 ECH