Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2472 ATGGTGGGTTTTGGCGGGAAAAAAGTGCGCCAAATGGTTGTTGGTTTCGGCGGCAGTGGCTTCGGTCAGGTCGCTATCGCTGTCGCAGTTTCCTTCCTCGTCCGTGTCTTCTCCGCTCCCGGCCCTGCTCTCTCGCCGGATAATGACCCCGACGATACGCAGGAGAACGGTTCTGACGATGCCGAAGCTCCTGCCGCCGGAAAGGTCACACCGGTCACAATCAGATGGAGAAACATCAATTGCTGCCTTTCCGATAAATCCTCCAAGTCCGTGAGATTTCTGCTTAGAAATGTGAGTGGAGAAGCGAGGCCTGGAAGGTTATTAGCCATAATGGGACCTTCAGGTTCAGGGAAGACAACTTTGCTTAATGTTCTTGCGGGTCAGCTCACAGCATCTCCTCGGTTGCATTTGAGTGGCGTTTTGGAGTTTAATGGAAAGCCTGCTTCGAAGAACGCGTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACTGTTCGGGAGACGTTGTCTCTTGCTACCGAACTTCAGCTTCCCAACATATCTTCTGCGGAAGAGAGGGATGAGTTCGTGAACACTCTCCTTTTCAAGCTAGGCTTGGTTAGTTGTGCTGATACACGTGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTGTCCTTGGCGTGTGAACTGCTTGCTAGTCCATCTGTTATATTTTCCGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACTCTACAGCAACTTGCACAAGATGGTCATACTGTTATATGTTCTATACATCAGCCAAGAGGCTCAGTGTATAAAAAATTTGACGATATCATCTTGCTAACAGAGGGTTCACTAGTTTATGCTGGTCCTGCTCGTCATGAACCACTGACTTACTTCTCAAAATTTGGGTACCAGTGCCCGGATCATGTAAATCCTGCTGAATTTTTGGCTGATCTCATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGAATCGATGGTCTTATTGAGTCATTCTCGCAATTGTTATCAAGAGACATATACGCAACTCCAATTATTGTAAACGATCTCTCCAACAGTAGAAAGAAAATCACCCAGAGGGCGGCAGTAGGAAAGGAGAAAGGAATTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGTCTTCGCGAGATGCACCAACAAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCTATGGCTGCTCTCACAAAGACGGTAGGTGTGTTTCCAAAGGAACGGGCAATTGTAGATAGAGAACGTGCTAAAGGTTCCTATTCCTTGGGTCCCTATCTGTTCTCAAAATTGTTGGCTGAGCTTCCCATTGGAGCAGCATTTCCATTAATGTTTGGTACTGTTTTGTATCCAATGGCACGCCTTCATCCTACCTTGCAGAGATTTGGAAAGTTCTGTGGCATTGTCACTATGGAATCTTTTGCCGCATCTGCTATGGGTCTCACTGTTGGTGCTATGGTTCCAACGACTGAAGCAGCAATGGCAGTAGGTCCCTCTCTGATGACAGTTTTTATTGTTTTCGGAGGCTACTATGTCAATCCTGAGAATACCCCAATCATTTTCCGCTGGATTCCTAATGTTTCTCTGATTAGATGGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAACATTCATTTGATATTCAAACTGGAGAGCAGGCGCTAGAGCGAATTTCCTTTGGGAAAAGTAGGATCAGGGATACGGTGATAGCACAAAATAGAATACTACTATTTTGGTATTGCACCACCTATCTTCTCCTCGAGAAAAACAAACCCAAATACCAGCTACTTGAAACCCCTATTGACGACAACGAGCCGCGTTTAAAACTTGAGGAGCTCAATTCTGAACAAGCTGATCAGACACTTGAAGCTCCGCCAGTTGGCCAAGTTGATTCCAACCAGGCCCCTGAGTCACCTGGAGTAGATCTTGTTGGCCCTTTTGTCCTCGAAGGTGCTAAGTAG 2181 0.4544 MVGFGGKKVRQMVVGFGGSGFGQVAIAVAVSFLVRVFSAPGPALSPDNDPDDTQENGSDDAEAPAAGKVTPVTIRWRNINCCLSDKSSKSVRFLLRNVSGEARPGRLLAIMGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKPASKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISSAEERDEFVNTLLFKLGLVSCADTRVGDAKVRGISGGEKKRLSLACELLASPSVIFSDEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYKKFDDIILLTEGSLVYAGPARHEPLTYFSKFGYQCPDHVNPAEFLADLISIDYSSADSVYTSQKRIDGLIESFSQLLSRDIYATPIIVNDLSNSRKKITQRAAVGKEKGIWWKQFWLLLKRAWMQSSRDAPTNKVRARMSIASAIIFGSVFWRMGNSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAELPIGAAFPLMFGTVLYPMARLHPTLQRFGKFCGIVTMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPNVSLIRWAFQGLSINEFSGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQLLETPIDDNEPRLKLEELNSEQADQTLEAPPVGQVDSNQAPESPGVDLVGPFVLEGAK* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2472 726 Pfam ABC-2 type transporter 398 608 IPR013525 GO:0016020|GO:0140359
Vra8g2472 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 305 IPR027417 -
Vra8g2472 726 SMART AAA_5 104 297 IPR003593 -
Vra8g2472 726 MobiDBLite consensus disorder prediction 43 64 - -
Vra8g2472 726 CDD ABCG_EPDR 71 302 - -
Vra8g2472 726 MobiDBLite consensus disorder prediction 683 718 - -
Vra8g2472 726 Pfam ABC transporter 95 247 IPR003439 GO:0005524
Vra8g2472 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 320 IPR003439 GO:0005524
Vra8g2472 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 676 - -
Vra8g2472 726 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 676 - -
Vra8g2472 726 MobiDBLite consensus disorder prediction 690 709 - -
Vra8g2472 726 Pfam ABC-2 type transporter 277 339 IPR043926 GO:0140359
Vra8g2472 726 Gene3D - 68 309 IPR027417 -
Vra8g2472 726 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2472 Vra-Chr8 42730000 42737399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2472 94 314 Calmodulin-binding Proteins AT2G36910 28.444 9.44e-11 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2472 8 42730000 42737399 Vra8g2472 8 42730000 42737399 ECH