Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2468 ATGTTCATGCTGCGTAGCATAAAACGTGCCACATCCCAATCAGTGTTGGGTTCCATGGCGCTTTTTCGATCATCCAAAAGGTTCGTCATCTCCAATTTCTTCCTTCCCCTGTCGGAATCTTCTTCCACATCTTCTTCCACATCCCTTAATCCTTCGTCAAGTTCAAATTTTCACCACCATTATCCCAAACCCACAATCCAATTTTCCTATGGGTCTCCAAAACAAACCACACTGGCCTTCCACACGGCCCAACCTAGGTCCACATCCAACGCCGAAGCAATCTGCAGAATCTTATCCAACTCTCGCGACTCCACCGTCGCTGCCTCTCTCGCTGCTGTTGTGGTGAATCCCTCGCCGGAGCTCGTCCTCGAGGTCTTGAGCAAACTCAGTAATGCCGGTACCCTGGCGCTTTCGTTCTTCCGTTGGGCCGAGAAGCAAGGCGAGTTCAAACACACCACAGAGACCTTTCACGCATTGATCGAAGCACTGGGTAAGATCAGACAGTTCAAATTGATTTGGACTTTGGTCGACGACATGAAGCAGCGAAAGTTGTTGACTTCTGACACTTTTGCCCTCGTTGCTCGCCGATACGTGCGAGCACGGAAGGTCAAGGAAGCAACCGAGACATTTGAGAAGATGGAGCGTTACGGTTTGAAGCCGCATGTATCGGATTTCAATAAGTTGATCGATGTGTTGTGTAAATCCAAGTGTGTTGAGAAGGCACATGAGATGTTTGATAAAATGCGGCAGTTAGGGTTGGACCCCGATATCAAGTCCTACACTATTTTGCTAGAAGGGTGGAGTCAGCTGCAGGACTTGATCAAACTCAATGAGTTGTGTAGGGAAATGGAGGATAAAGGGTTTCAGATTGATGTTGTTGCGTATGGGATAATCATCAATGCGTATTGCAAGGCTAAGAAATTTGATGAAACCATTAGGTTGTACCATGAGATGAAAGCTAAGGGTCTGAGGCCTAGTCCCCATGTTTATTGTACTTTGATTAACGGATTGGGTTCGGATAGGAGATTGAACCAAGCTCTTGAGTTTTTTGAGGCATCTAAGGCTAGTGGCTTTGCACCTGAGGCTCCCACCTACAATGCTGTTGTTGGGGCTTATTGCTGGTCTTTGCGTATGGATGATGCGTATAGGATGGTTGGCGAGATGAAAAAGTGTGGGATCGGTCCAAATTCTCGAACTTTTGATATTATACTTCATCATCTTATAAAGGGTCGTAGGATTGAAGAGGCTTGCTCGGTTTTTCACAGAATGAGTGGCGAGTTGGGGTGCGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGAAAGATTGGATATGGCGATGGCAGTTTGGGATGAGATGAAAGAGAAGGGAATTCTTCCTGGAATGCACATGTTCTCCACGTTGATCTGTTCCTTGTGCCATGAAAATAAGTTGAATGAAGCGTGTAAGTACTTTCAAGAAATGTTAGATGTGGGAATTCGGCCTCCTGCCAAAATGTTCAGCACCTTGAAGGAAGCTCTAGTTGATGCGAGGATGGAGCATATTGCCATGCATTTTGCTTTGAAAATTGATAAACTCAGGAAGTCTCCATTGGTTGCTTGA 1620 0.4599 MFMLRSIKRATSQSVLGSMALFRSSKRFVISNFFLPLSESSSTSSSTSLNPSSSSNFHHHYPKPTIQFSYGSPKQTTLAFHTAQPRSTSNAEAICRILSNSRDSTVAASLAAVVVNPSPELVLEVLSKLSNAGTLALSFFRWAEKQGEFKHTTETFHALIEALGKIRQFKLIWTLVDDMKQRKLLTSDTFALVARRYVRARKVKEATETFEKMERYGLKPHVSDFNKLIDVLCKSKCVEKAHEMFDKMRQLGLDPDIKSYTILLEGWSQLQDLIKLNELCREMEDKGFQIDVVAYGIIINAYCKAKKFDETIRLYHEMKAKGLRPSPHVYCTLINGLGSDRRLNQALEFFEASKASGFAPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIILHHLIKGRRIEEACSVFHRMSGELGCEPSVSTYEIMVRMFCNEERLDMAMAVWDEMKEKGILPGMHMFSTLICSLCHENKLNEACKYFQEMLDVGIRPPAKMFSTLKEALVDARMEHIAMHFALKIDKLRKSPLVA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vra8g2468 539 Pfam PPR repeat family 224 266 IPR002885 -
Vra8g2468 539 Pfam PPR repeat family 291 337 IPR002885 -
Vra8g2468 539 Pfam PPR repeat family 364 408 IPR002885 -
Vra8g2468 539 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 88 536 - -
Vra8g2468 539 PANTHER OS01G0505500 PROTEIN 88 536 - -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 189 220 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 470 501 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 329 360 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 435 466 IPR002885 -
Vra8g2468 539 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vra8g2468 539 Pfam PPR repeat 428 460 IPR002885 -
Vra8g2468 539 Pfam PPR repeat 462 494 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vra8g2468 539 Gene3D Tetratricopeptide repeat domain 410 536 IPR011990 GO:0005515
Vra8g2468 539 Pfam PPR repeat 195 218 IPR002885 -
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Vra8g2468 539 Gene3D Tetratricopeptide repeat domain 308 409 IPR011990 GO:0005515
Vra8g2468 539 Gene3D Tetratricopeptide repeat domain 181 307 IPR011990 GO:0005515
Vra8g2468 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 431 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2468 155 517 Glycosyltransferase AT1G05670 27.198 1.23e-48 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2468 8 42698205 42700198 Vra8g2468 8 42698205 42700198 ECH