Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2458 ATGGCAATCCAGCAACAGAATCACCAACTACAACATAACGACAATGTCTCATCTCTCCTTGATGCCCTTTACTGTGATGAAGCAAAATGGGAAGATGAAGAGGAGGAGGAAGAAGAAGATGAAGAGAGTGATGTCACAACAAACAACGATGCATGTAACGGACCTTCTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTCTTCTGGGAAGACCAGGAACTGAACTCTCTCTTTTCCAAAGAGAAGCTTCAGCATCAACAACTTTACGGCTATAACATTCATGCTAATAACAATAATGATGCTTGTGACAGTATTAACAATAATGTGCATTTCGACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCTGTGGAATGGATGCTCAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTCGTGGCTGTCACTTGCATCTCTTTGGCAGCAAAGGTTGAAGAAACTCAAGTGCCTCTTCTCTTAGACCTTCAAGTGCAGGACACTAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATCATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGACGCTGCGAGCACCTTCTTCTGTCTGTGCTTTTGGATTCGAGATTTGTTGGGTGCCTTCCTTCTGTTTTGGCCACTGCAACAATGCTTCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGACGAGTGTTATAATGCTATTCTCCAATGCTCAAATGGCAATAGTTATGGCCATAACAACAACATCTACAAACGCAAGTATGAGCAAATTCCAGACAGCCCAAGTGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCACTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTGA 1191 0.4433 MAIQQQNHQLQHNDNVSSLLDALYCDEAKWEDEEEEEEEDEESDVTTNNDACNGPSLFPLLLLEQDFFWEDQELNSLFSKEKLQHQQLYGYNIHANNNNDACDSINNNVHFDPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHSGGMEYKNQLLSVLKISKEKVDECYNAILQCSNGNSYGHNNNIYKRKYEQIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2458 396 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vra8g2458 396 SUPERFAMILY Cyclin-like 222 332 IPR036915 -
Vra8g2458 396 SMART Cyclin_C_2 221 350 IPR004367 -
Vra8g2458 396 Gene3D - 220 311 - -
Vra8g2458 396 SMART cyclin_7 124 212 IPR013763 -
Vra8g2458 396 MobiDBLite consensus disorder prediction 29 51 - -
Vra8g2458 396 Gene3D - 117 219 - -
Vra8g2458 396 MobiDBLite consensus disorder prediction 29 46 - -
Vra8g2458 396 Pfam Cyclin, N-terminal domain 117 218 IPR006671 -
Vra8g2458 396 PANTHER CYCLINS 44 373 IPR039361 -
Vra8g2458 396 CDD CYCLIN 119 211 IPR013763 -
Vra8g2458 396 PANTHER CYCLIN D3.1 PROTEIN 44 373 - -
Vra8g2458 396 SUPERFAMILY Cyclin-like 114 219 IPR036915 -
Vra8g2458 396 Pfam Cyclin, C-terminal domain 221 332 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2458 Vra-Chr8 42602049 42604247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2458 1 313 Core Cell Cycle Gene Families AT4G34160 54.313 3.23e-112 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2458 8 42602049 42604247 Vra8g2458 8 42602049 42604247 ECH
Vra6g1832 6 34832201 34833987 Vra8g2458 8 42602049 42604247 ECH
Vra5g1484 5 21508122 21510519 Vra8g2458 8 42602049 42604247 ECH
Vra11g0553 11 4237101 4238818 Vra8g2458 8 42602049 42604247 PCT