Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1680 ATGGACACAGTTCAGTGCCCTCAGGAGATGGTAATGAAACCAATGGAAGATATAGCAGCTACAAATACATGTCCGAAGGCTGCAGGTGCTGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAAGCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTATAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACAGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAGAGATCTTCTACTTTTTCTTCCACACCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACGACCCCAGATTTCAGAAACATCTCTGAATTGGTTCAGCAAAACAACAACAATAGTAGCAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTACCACCACTCCTACAACTTCACACCTTTCTGCATTGGAGCTTCTCACTGGGATCACTTCAACTTCCACCGGCTTCACTTCTTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGGTTTCCTCTGCCAGATTTCAAGCCAACCTTGAATTTCTCTTTAGATCACGGGTACGCCAGCCTGCATAATATTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTACTACCACAATGGATCAGAAGCAGCAAGGAGATTCAACCGGGTATTGGACTGGAATGTTTGGCGGAGGAGGATCATGA 873 0.4525 MDTVQCPQEMVMKPMEDIAATNTCPKAAGAVERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTFSSTPHNNSPDNKKLPDLVIAPHSQNPKNNIHQGQDLNLGFPATTPDFRNISELVQQNNNNSSSNNNMSASASSSSSTTSTTTPTTSHLSALELLTGITSTSTGFTSFMPVPVPADPNPSYACGFPLPDFKPTLNFSLDHGYASLHNIQSGRLLFPFEDLKQVSTTTTMDQKQQGDSTGYWTGMFGGGGS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1680 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 286 IPR045174 GO:0003700|GO:0006355
Vra8g1680 290 MobiDBLite consensus disorder prediction 84 143 - -
Vra8g1680 290 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Vra8g1680 290 MobiDBLite consensus disorder prediction 92 111 - -
Vra8g1680 290 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Vra8g1680 290 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Vra8g1680 290 MobiDBLite consensus disorder prediction 123 140 - -
Vra8g1680 290 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 286 - -
Vra8g1680 290 MobiDBLite consensus disorder prediction 157 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1680 Vra-Chr8 33924924 33926814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1680 1 288 C2C2-Dof Transcription Factor Family AT4G24060 42.693 1.28e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra8g1680 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1680 - - pvu:PHAVU_001G080800g 428.328