Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra8g0250 | ATGCAGAGGCCTCCACCTGAAGATTTTCTGTTGAAGGAGACCAAACCCCACCTTGGAGGGGGAAAGGTCTCTGGTGATAAACTTACCAGTACCTATGATCTGGTTGAGCAAATGCAGTACCTTTATGTGAGGGTTGTGAAGGCCAAGGACTTGCCTGCCAAAGATGTCACTGGGAGTTGTGATCCTTATGCTGAAGTCAAGCTTGGGAACTACAAGGGTACTACCAGGCATTTCGAGAAGAAAACCAATCCTGAGTGGAACCAGGTTTTTGCCTTCTCGAAGGACCGGCTTCAAGCGTCTGTGCTGGAGGTTACCGTGAAGGATAAGGATGTTGTGAAGGATGACTTCATCGGACGTGTCTGGTTTGACCTGAATGAGGTCCCCAAAAGGGTGCCTCCAGATAGTCCTTTGGCGCCCCAATGGTATAGATTAGAAGATAGAAAGGGTGACAAGGTGAAGGGAGAGCTGATGTTGGCTGTTTGGATGGGTACCCAGGCTGATGAAGCTTTTCCCGAAGCTTGGCACTCGGATGCTGCTACGGTTGGTGGAAGTGATGCTCTTGCCAACATTAGATCGAAAGTGTATCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAGGACTTACAGCCAACTGATAAGGCTAGGTACCCTGAGGTTTTCGTGAAGGCTATTCTGGGGAATCAAGCCTTGAGGACCAGAATCTCTCATAGTAGGAGTATTAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCAGCCGAACAGTTTGAGGAACCGCTGATATTGAGTGTGGAGGATAGAGTTGCCCCTAACAAGGATGAAGTGTTGGGGAGGTGTGCTATTCCTCTGCAGTATGTGGAAAAGAGACTAGACCACAAACCAGTGAATACAAGGTGGTTCAATCTGGAAAGGCATATTGTTGTTGAGGGGGAGAAGAAGAAGGATACCAAATTTTCAAGCAGGATTCACATGAGGGTTTGTCTAGAAGGTGGCTATCATGTTTTAGACGAATCTACTCACTACAGCAGTGATCTTCGTCCAACAGCGAAACAGCTGTGGAAGTCTGGCATTGGTGTTCTTGAACTGGGGATATTGAATGCTCATGGTTTGATGCCGATGAAAACGAAGGATGGGAGAGGGACAACAGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGGTCAGGACAAGGACAATCATTGACAGCTTTGCTCCAAGATGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTGTTTGATAACTGTCATCTGCATGGTGGAGACAAGGCTGGTGGAGCAAAAGATTCAAAGATTGGAAAGGTGAGGATTCGTCTTTCCACCCTTGAGACTGATCGGGTCTATACACATTCCTATCCACTTCTTGTTCTTCACCCAAACGGGGTGAAGAAGATGGGTGAGATTCACTTGGCTGTGAGGTTCACTTGTTCATCTCTGCTCAATATGATGCACATGTATTCACAACCCTTGTTGCCAAAAATGCACTACATACACCCGCTGACTGTCAGCCAGCTCGACAGTCTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCCGAGCCACCGCTGAGAAAAGAAGTAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAAGCCAACTTCTTCAGGATTATGGGGGTTTTGGGTGGTCTAATTGCTGTAGGAAAATGGTTTGATCAGATTTGCAATTGGAGAAGTCCAGTCACTACAATTCTGATCCATATCTTGTTCATAATACTAGTTATGTATCCAGAGCTTATCTTGCCTACAATTTTCCTTTACCTCTTCTTGATTGGAATTTGGTACTACAGATGGAGGCCAAGGCAACCTCCTCACATGGACACTCGTCTCTCTCATGCAGACTCGGCACATCCAGATGAACTTGATGAAGAGTTTGACACATTCCCTACCTCCCGGCCAAATGACATTGTGAGGATGCGATATGATCGACTTAGAAGCATTGCTGGGAGGATTCAAACTGTGGTTGGGGACTTGGCCACTCAGGGTGAAAGGCTGCAATCTTTGCTAAGCTGGCGTGATCCCAGAGCTACATCACTGTTTGTGCTTTTCTGTCTAGTTGCTGCTGTTGTTCTGTACGTCACTCCGTTCCAAGTTGTGGCCCTCTTGACAGGAATTTATGTGTTGAGACATCCAAGGTTTCGCCATAAGCTTCCGTCGGTGCCACTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTCTGA | 2325 | 0.4641 | MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVGGSDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKARYPEVFVKAILGNQALRTRISHSRSINPMWNEDLMFVAAEQFEEPLILSVEDRVAPNKDEVLGRCAIPLQYVEKRLDHKPVNTRWFNLERHIVVEGEKKKDTKFSSRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLELGILNAHGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWRSPVTTILIHILFIILVMYPELILPTIFLYLFLIGIWYYRWRPRQPPHMDTRLSHADSAHPDELDEEFDTFPTSRPNDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATSLFVLFCLVAAVVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML* | 775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra8g0250 | 774 | PANTHER | C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN | 1 | 774 | - | - | |
| Vra8g0250 | 774 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Vra8g0250 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 354 | IPR035892 | - | |
| Vra8g0250 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 40 | 177 | IPR035892 | - | |
| Vra8g0250 | 774 | Pfam | Plant phosphoribosyltransferase C-terminal | 619 | 774 | IPR013583 | - | |
| Vra8g0250 | 774 | ProSiteProfiles | C2 domain profile. | 346 | 472 | IPR000008 | - | |
| Vra8g0250 | 774 | Pfam | C2 domain | 364 | 474 | IPR000008 | - | |
| Vra8g0250 | 774 | Pfam | C2 domain | 201 | 307 | IPR000008 | - | |
| Vra8g0250 | 774 | Pfam | C2 domain | 40 | 142 | IPR000008 | - | |
| Vra8g0250 | 774 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 363 | 503 | IPR035892 | - | |
| Vra8g0250 | 774 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Vra8g0250 | 774 | Gene3D | C2 domain | 188 | 333 | IPR035892 | - | |
| Vra8g0250 | 774 | Gene3D | C2 domain | 24 | 162 | IPR035892 | - | |
| Vra8g0250 | 774 | CDD | C2C_MCTP_PRT_plant | 202 | 352 | - | - | |
| Vra8g0250 | 774 | ProSiteProfiles | C2 domain profile. | 22 | 142 | IPR000008 | - | |
| Vra8g0250 | 774 | SMART | C2_3c | 40 | 136 | IPR000008 | - | |
| Vra8g0250 | 774 | SMART | C2_3c | 202 | 300 | IPR000008 | - | |
| Vra8g0250 | 774 | SMART | C2_3c | 364 | 471 | IPR000008 | - | |
| Vra8g0250 | 774 | ProSiteProfiles | C2 domain profile. | 181 | 305 | IPR000008 | - | |
| Vra8g0250 | 774 | Gene3D | C2 domain | 339 | 495 | IPR035892 | - | |
| Vra8g0250 | 774 | PANTHER | PROTEIN QUIRKY-LIKE | 1 | 774 | - | - | |
| Vra8g0250 | 774 | CDD | C2B_MCTP_PRT_plant | 40 | 164 | - | - | |
| Vra8g0250 | 774 | CDD | C2D_MCTP_PRT_plant | 364 | 491 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra8g0250 | Vra-Chr8 | 3149415 | 3153199 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vra8g0250 | 8 | 3149415 | 3153199 | Vra5g2158 | 5 | 27439355 | 27442146 | ECH | |
| Vra8g0250 | 8 | 3149415 | 3153199 | Vra2g1662 | 2 | 24749263 | 24752250 | ECH | |
| Vra8g0250 | 8 | 3149415 | 3153199 | Vra8g0250 | 8 | 3149415 | 3153199 | ECH | |
| Vra3g0004 | 3 | 54861 | 58688 | Vra8g0250 | 8 | 3149415 | 3153199 | PCT |