Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0142 ATGTGTCTGCGACCACACAACTTTAGTAGTAACATCAAGGTTTTTGTGATGATGGAGAGTGGATGGAAGGCTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAATACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTTCGGAATGTGCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCTTGCTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCATCACCTTGTGGGAATGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCCAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCATCAGTGCTGAGTGATGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAACCCCAGTTCTGAATCTGGAATTGAGAGCAGTAATCCAGATCAAGTTCGAACAGCTTTTGATCCTTCTCTGGAGAATAATTCAAGGCTATCAAACACAGATGTTTCTGATCCTAGTACTTTGCCTGAAGAAATTTCTCTTACTGGGTGTTTGAATCTTCCAGAACAACCATCCACACATTCTGCTGAGGCTAATAATGGTGGCCAAATATGCTATGGTGAGTTCAGAACTATGCAGACTATTCAAGATGGAGTTCAGCAGTGTAGTAGTCATGGTGGTGCTGTGAATTTTGAGCTGCCGCCATTACCCGGTGAAGTGGAAGCCTCACACGATCATCATCATCATCATATGATGTGGTCATCAAATTCTGAGATGATGACATTTCAAGCCACACAACCACCACTTCTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCTTGA 939 0.4281 MCLRPHNFSSNIKVFVMMESGWKAEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKTSSSSPCGNATDHNNNPVGHSYDPRIRTSAASSSSSVLSDGPNIDLALVYANFLNQNPSSESGIESSNPDQVRTAFDPSLENNSRLSNTDVSDPSTLPEEISLTGCLNLPEQPSTHSAEANNGGQICYGEFRTMQTIQDGVQQCSSHGGAVNFELPPLPGEVEASHDHHHHHMMWSSNSEMMTFQATQPPLLGPEVHDADLLIGNWSPFDLP* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0142 312 Pfam Dof domain, zinc finger 31 84 IPR003851 GO:0003677|GO:0006355
Vra8g0142 312 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 18 311 - -
Vra8g0142 312 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Vra8g0142 312 MobiDBLite consensus disorder prediction 101 125 - -
Vra8g0142 312 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Vra8g0142 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 311 IPR045174 GO:0003700|GO:0006355
Vra8g0142 312 MobiDBLite consensus disorder prediction 159 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0142 Vra-Chr8 1607120 1608902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0142 24 311 C2C2-Dof Transcription Factor Family AT3G52440 39.672 1.36e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra8g0142 zf-Dof 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0142 - - gmx:100787193 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0142 8 1607120 1608902 Vra8g0142 8 1607120 1608902 ECH
Vra3g0609 3 6674350 6675359 Vra8g0142 8 1607120 1608902 PCT