Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3284 ATGGGTCGTCGTAAAATTGAAATTGCAGCAGTGAAGGATCCTAATACGAGACAAGTCACGTTTTCAAAGCGTCGAACAGGTTTATTCAAAAAGGCGAATGAACTATCTATACTGTGTGGTGCAGAAATTGCAATTGTCGTGTTCTCTATCGGAAACAGACCTTACTCTTTTGGGCACCCAGGTGTCGATGTTGTTGCAGCCAAATTTCTTGAACATGAAATCATCAAATCAAATGATGTCAAACAAAACAACGTAGAAGTTGGTGACATTGGTAGGTTGAATCAACAACTGTTAGATATTGAAGCCCGAATACTTGTGGAGGAAAAGAAGGGCTTAGAGCTTGATCAGATACTAAAACAGCACCGACTGTCACAGCCTTCCCAATTTAAGCAATTACAAGATTCATATTTAGAATTCCAACGTAGGCTGAAAGATTACACTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAAGAACCCGTTGTCGAAATAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 534 0.3895 MGRRKIEIAAVKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPGVDVVAAKFLEHEIIKSNDVKQNNVEVGDIGRLNQQLLDIEARILVEEKKGLELDQILKQHRLSQPSQFKQLQDSYLEFQRRLKDYTDAIEVSECLILLAQEPVVEITKQVKKRRKN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3284 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Vra7g3284 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 171 - -
Vra7g3284 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Vra7g3284 177 PANTHER MADS BOX PROTEIN 2 171 - -
Vra7g3284 177 Coils Coil 129 149 - -
Vra7g3284 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3284 Vra-Chr7 52377490 52378071 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3284 1 161 Type I MADS-box Gene Family AT2G34440 36.842 4.32e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g3284 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3284 - - gmx:100791127 254.218