Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3163 ATGGAAAAGCTCTTTTTCAACTGTTTCATTGGATGCTGTCTTCTTTTTTCTCTCTTGCCTGTGCATGGCAAACCATTGTCATGCAATGAAACACCCTACCCACATGTGTGCAAACATTACGTTGACACTACCAACACATTATCAACCCTAGATGCTCCGTCCTCTTCCTTCCACGATGTGGCCCTTAAGGTCACCGTGGATCAAGCCATGGAGGTTTATAAACTTGTCTCAAACATGGACCTAAATAATTTCAAGGACAAGCGAGCCAAGTCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAGCGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCACCAAACATGCCAAAATGGTTTCACTGAACTCAACGTTCCCTCTCACCTAAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTTAGCAATTCCTTGTCCCTTAGCAAGGCTATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGAAAGTTGCTTTCCGATGGCTTCCCCTCTTGGATCTCACGTTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGCAGTGGGAACTATAAAACCATCTCAGAGGGTGTGGCTGCAGCTTCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAATATTGATATCTCGAGAACTGTGAAAAACTTGATGATCGTCGGAGATGGCATGGGTGCTACTATTGTTACTGGTAGTAAAAACGCGCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTTCTGGAGACGGCTTCATTGCTCGGGACATCACCTTCGAAAATACCGCCGGACCGCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGATCCGACCACTCGGTATTTTATCGGTGCAGCTTTAAGGGGTACCAAGACACCTTATACGTGTACGCCAACCGCCAATTCTACCGTGACTGTGACATATACGGAACCTTAGACTTCATTTTCGGTGACGCCGTGTCGGTGCTTCAAAACTGCAACATCTACGTGAGGAAGCCGATGAGCAACCAGCAGAACACGGTTACAGCACAAGGAAGAACCGACCCTAATGAGAACACAGGCATCATCATCCATAACTGTCTCATCACCGCAGCTGGGGACCTGAAAGCGGTGCAGGGCTCTTTTAAAACCTATCTGGGTCGCCCCTGGCAAAAGTACTCAAGGACTGTGATCATGAAGAGTGCCCTTGATGGCTTGATTAACCCCGCAGGTTGGTCTGAGTGGAGCGGAAACTTTGCACTGAGCACTCTATATTACGGTGAACATGCGAACACTGGAGCAGGTGCCGGCACCGGAGGGAGGGTGAAGTGGGGAGGGTTTCGTGTGCTCTCCAGCGCTGAGGCTGTGAAGTTCACCGTCGGAGAATTCTTGGCCGGGGGATCGTGGATTCCTGGGAGTGGCGTGCCCTTTGACGCGGGTTTATGA 1569 0.4863 MEKLFFNCFIGCCLLFSLLPVHGKPLSCNETPYPHVCKHYVDTTNTLSTLDAPSSSFHDVALKVTVDQAMEVYKLVSNMDLNNFKDKRAKSAWEDCLELYEDTLYQLKRSANSNNLNDRLTWQSASIANHQTCQNGFTELNVPSHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISRSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDISRTVKNLMIVGDGMGATIVTGSKNAQDGSTTFRSATFAVSGDGFIARDITFENTAGPQKHQAVALRSGSDHSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTLDFIFGDAVSVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNCLITAAGDLKAVQGSFKTYLGRPWQKYSRTVIMKSALDGLINPAGWSEWSGNFALSTLYYGEHANTGAGAGTGGRVKWGGFRVLSSAEAVKFTVGEFLAGGSWIPGSGVPFDAGL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3163 522 SMART PMEI_2 21 166 IPR006501 GO:0004857
Vra7g3163 522 SUPERFAMILY Pectin lyase-like 206 521 IPR011050 -
Vra7g3163 522 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Vra7g3163 522 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Vra7g3163 522 ProSitePatterns Pectinesterase signature 2. 356 365 IPR033131 -
Vra7g3163 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Vra7g3163 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Vra7g3163 522 PANTHER PECTINESTERASE 21 521 - -
Vra7g3163 522 Gene3D - 205 522 IPR012334 -
Vra7g3163 522 CDD PMEI-like_3 26 143 - -
Vra7g3163 522 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 21 521 - -
Vra7g3163 522 SMART complete 245 425 IPR006633 -
Vra7g3163 522 Pfam Pectinesterase 211 507 IPR000070 GO:0030599|GO:0042545
Vra7g3163 522 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3163 Vra-Chr7 51355022 51358907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3163 2 522 Carbohydrate Esterase AT1G23200 50.903 0.0 536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3163 7 51355022 51358907 Vra7g3163 7 51355022 51358907 ECH