Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3138 ATGGAAGGAATCCTTCTATTTCTACTTTCCTGGCCTGCATCTGCATACAAAAAAATGAGAAATTCTTTGCAGTTTGTTTGGCCTGGGATCTTGTGTTTGATGTTACTGAGTTTTGAATATGAAGTTGAAACAAAGTCCACCATTGAAGCATGCAATTCCTCAGACTCATGCCCCTCTCTCCTCTCTTATCTCTTGCCATGGGACTCCAAAGTATCAGAAATCGCGACTCGTTTCCATGTAAACGCCTCTGATATCTTGGCGTCCAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTGAGGGCCAAAACGTTTGTCAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCGTCTACACTGTTCGTGCAGCAGACACAGCTGCGTCCATATCAGAAGGTTATGGTGGGTTGGTCAGTGGTGAACAAATCAAGATTCTGAACAGCATCAATGGCAGCAACCCCTTGAGGAATGGAGGCACCATTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGGAACCGCTGTTTACATGTCATATGTTGTGCAGAGAAGAGAGAGCCTGAGCAGCATAGCAGCAAAGTTTGGTACAACTATTTCGGACTTGAAAGCTGTCAATGGCTTTTCGGAACCTACGGTAGATCCTGGAGACATTATATCTCTTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCCAACCAATGGATATTACCAGGATGCGATGCGTTCCTTCTGGGCTAGCTGTTCCCTGCTATAACTTACGTTGCAAACAATCCAATCTTATTATTGGCAGTGAATGTGTTGAGCATTCAGAAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCTTCTTACCTCCAGTGTCCTGATAATGTCTGTCATAGACGACCATCATGTTGGCCTTTCTCAGCATATTCTGAAGACCCATTTGGTATGTCTCCGAAGACATCCTCCTCCTTGCCACTGCCAGTTTCTAAAGCTTCTCAGAAGACTAGTGCCTTTAATGGAAGGCTTGCTCCATTTTTAATCAATGTGCTGCAAATATTCTTATTTTTAAAGTTTATCCTTTATTTTCTGATTTGA 1242 0.4332 MEGILLFLLSWPASAYKKMRNSLQFVWPGILCLMLLSFEYEVETKSTIEACNSSDSCPSLLSYLLPWDSKVSEIATRFHVNASDILASNSLFPITSSSAHQILRAKTFVKIPIFCSCVDGIRRSMSTVYTVRAADTAASISEGYGGLVSGEQIKILNSINGSNPLRNGGTIVIPLPCTCFNNVNNGGTAVYMSYVVQRRESLSSIAAKFGTTISDLKAVNGFSEPTVDPGDIISLPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCQPMDITRMRCVPSGLAVPCYNLRCKQSNLIIGSECVEHSETACNVIQCVYRGHRGGKILSSMKNSSYLQCPDNVCHRRPSCWPFSAYSEDPFGMSPKTSSSLPLPVSKASQKTSAFNGRLAPFLINVLQIFLFLKFILYFLI* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3138 413 SMART LysM_2 128 174 IPR018392 -
Vra7g3138 413 SMART LysM_2 193 236 IPR018392 -
Vra7g3138 413 Gene3D LysM domain 185 244 IPR036779 -
Vra7g3138 413 Gene3D LysM domain 121 184 IPR036779 -
Vra7g3138 413 ProSiteProfiles LysM domain profile. 192 235 IPR018392 -
Vra7g3138 413 Pfam LysM domain 194 236 IPR018392 -
Vra7g3138 413 Pfam LysM domain 129 174 IPR018392 -
Vra7g3138 413 SUPERFAMILY LysM domain 192 236 IPR036779 -
Vra7g3138 413 CDD LysM 127 173 IPR018392 -
Vra7g3138 413 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 30 368 - -
Vra7g3138 413 CDD LysM 193 235 IPR018392 -
Vra7g3138 413 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 30 368 - -
Vra7g3138 413 ProSiteProfiles LysM domain profile. 127 173 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3138 Vra-Chr7 51177112 51181138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3138 37 342 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.481 3.12e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g3138 - - vra:106767878 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3138 7 51177112 51181138 Vra7g3138 7 51177112 51181138 ECH