Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2882 ATGCAAGGTCACACTACGAAAAAGGAAACTGATACTCACTCTACCATGCCACCATTCTCTCAAATCCCACCTTCTTCTTCTTCTTTTCTTCACCCTTCAACCATTGCCGAAGCAACTGCTAACATCACCAGCAGAAAGCGTGTTAAGAGAACGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGAGTGGAAGGATCCACCGTTGAATGTGGTAACAATAATAGAAATTGTTCACTTGTGGTTACTGTTTCTGCTAATGTTGCATTCTTTGGTATTCAATGGGTGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGGTTTGTAG 642 0.4143 MQGHTTKKETDTHSTMPPFSQIPPSSSSFLHPSTIAEATANITSRKRVKRTSHSNCGSVNMERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTVECGNNNRNCSLVVTVSANVAFFGIQWVPRPGLVTQILKVFCNHQAEILAANVTVNNGKLILAITALVQNNGNCVVEKIKREIMGL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2882 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vra7g2882 213 Coils Coil 93 123 - -
Vra7g2882 213 SMART finulus 59 109 IPR011598 GO:0046983
Vra7g2882 213 Gene3D - 39 131 IPR036638 GO:0046983
Vra7g2882 213 MobiDBLite consensus disorder prediction 1 31 - -
Vra7g2882 213 Pfam Helix-loop-helix DNA-binding domain 61 104 IPR011598 GO:0046983
Vra7g2882 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 115 IPR036638 GO:0046983
Vra7g2882 213 MobiDBLite consensus disorder prediction 12 31 - -
Vra7g2882 213 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 211 - -
Vra7g2882 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 211 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2882 31 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.458 8.60e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2882 - - gmx:102670256 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2882 7 48968201 48970056 Vra7g2882 7 48968201 48970056 ECH