Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1967 ATGCAGCAAATACACTCCATGGCACCGGGAACAGCTGGAGGAGGAGGAGGAGGATCAAGGTTTTTCTCCGGCACCGCCGCCACGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTTAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGAGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCGAAAACCTCCGACGCCGTCCCCCCGCCCCCGCCGCCCGACCCGGACCATTCCAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGATAAACTCTGATTCCACCAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGAAACGAATCCTTTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACGGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACACTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCTGA 861 0.5819 MQQIHSMAPGTAGGGGGGSRFFSGTAATDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAVPPPPPPDPDHSSSESSSLTAAAAEPVSAPINSDSTNMQESKLSVPVDPVLETNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNGLPDASSFQWQHSKVSSNQELKLAESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1967 286 MobiDBLite consensus disorder prediction 1 24 - -
Vra7g1967 286 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Vra7g1967 286 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Vra7g1967 286 MobiDBLite consensus disorder prediction 118 149 - -
Vra7g1967 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 277 IPR045174 GO:0003700|GO:0006355
Vra7g1967 286 MobiDBLite consensus disorder prediction 87 150 - -
Vra7g1967 286 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Vra7g1967 286 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1967 Vra-Chr7 39138046 39139499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1967 29 283 C2C2-Dof Transcription Factor Family AT5G60850 44.211 9.35e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1967 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1967 - - pvu:PHAVU_003G182100g 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1967 7 39138046 39139499 Vra2g1610 2 24109042 24111087 PCT