Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1898 ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAGAGTGCTGACGGAAAAGAAGAGCAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAGCTAGAAGCTGATCCTTCTCCGAGTTCAGGAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACGGCAAAATCAAAAGCTGATAAATCAGAGAAGGAGCAAGGCGATGCGGCTCACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCCAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCGATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATGGCACAAAAAATGGATTTCAGCATGGCTTTGAGGATCAAAGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCAACTACATCTTCCATTACAGTTTCCAATTCCATGGGAGAAAGTAGCAAAAACACCTTCCAACCACAACCGGTGCTCCAACATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATATGCCTTATCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCGAACTCTCCAGGCTCCGGTCCAAACTCTCCGACTCTGGGGAAGCACTCGCGGGACGGGGACATGATCAAGCAAGACTCCTTGCACAAAGAAGAAGGTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCGAAAACGTTGAGAATCGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTAAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1410 0.4603 MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEEEEEEEESADGKEEQDAGVENVTEEELEADPSPSSGETKDSGTSPEAIVNPKTPSIEEETAKSKADKSEKEQGDAAHSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPTLKGNGRVLSFGLDAHAPICDSMASVLNLGEKKVPDGTKNGFQHGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGESSKNTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALSFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSGPNSPTLGKHSRDGDMIKQDSLHKEEGSKPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVSGGGMFKAFQSKKEEKNHVEASPVLMANPAALSRSLNFHENS* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1898 469 MobiDBLite consensus disorder prediction 64 80 - -
Vra7g1898 469 PANTHER CYCLIC DOF FACTOR 1 1 468 - -
Vra7g1898 469 Coils Coil 22 45 - -
Vra7g1898 469 MobiDBLite consensus disorder prediction 353 369 - -
Vra7g1898 469 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Vra7g1898 469 PANTHER CYCLIC DOF FACTOR 2 1 468 IPR045174 GO:0003700|GO:0006355
Vra7g1898 469 MobiDBLite consensus disorder prediction 87 120 - -
Vra7g1898 469 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Vra7g1898 469 MobiDBLite consensus disorder prediction 353 376 - -
Vra7g1898 469 MobiDBLite consensus disorder prediction 1 120 - -
Vra7g1898 469 MobiDBLite consensus disorder prediction 21 61 - -
Vra7g1898 469 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Vra7g1898 469 MobiDBLite consensus disorder prediction 261 288 - -
Vra7g1898 469 MobiDBLite consensus disorder prediction 240 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1898 Vra-Chr7 38481871 38485071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1898 1 467 C2C2-Dof Transcription Factor Family AT3G47500 49.076 2.68e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1898 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1898 - - gmx:778113 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1062 3 10829353 10832615 Vra7g1898 7 38481871 38485071 ECH
Vra4g1030 4 17519854 17523229 Vra7g1898 7 38481871 38485071 ECH
Vra7g1898 7 38481871 38485071 Vra7g1898 7 38481871 38485071 ECH
Vra11g1240 11 14162089 14165559 Vra7g1898 7 38481871 38485071 ECH
Vra11g1240 11 14162089 14165559 Vra7g1898 7 38481871 38485071 PCT