Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1832 ATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGGAAAAACAAGCGTATCAAACGTCCAAACGGTGACGCCTCTCCTCCTTCTTCCTCCACTCCTACCTCCAATTCAAATCCTCCTTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATGTCAGTGTAAACCCTTTGTTTTATGGCCTACCCAATACTAACGTTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCACTCTCAGCTGAATGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAGCCAACCCAGTGATAATGGGTTTAGTGCTACTACTACCACTACTACTTCCAATACTAACAACTTTCTTTCTGCTTATAATTCCATCTTTGGTTCTTCTTCCTCCTCCACTTGTGCACCCACCACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTCCTGCAACAGAAGTTTATCGGTGCTGCTGGGGTGAAGGGTGATCATGGTGGCAACGGTTTCCAGGGTTTGGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTTGGAGTGGAGTAATAGTAACAACAATAACAATGGTGGTGGCGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACCAGTTTGAGTGCGTGGAGTGATCAACCTAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 957 0.4713 MGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIKRPNGDASPPSSSTPTSNSNPPSLPHIPSTSTANHVSVNPLFYGLPNTNVCDVMDVPFPRFNLHSQLNALGLGFSSGVNVISSQPSDNGFSATTTTTTSNTNNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIGAAGVKGDHGGNGFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNSNNNNNGGGGACQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1832 318 MobiDBLite consensus disorder prediction 65 106 - -
Vra7g1832 318 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Vra7g1832 318 MobiDBLite consensus disorder prediction 81 106 - -
Vra7g1832 318 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Vra7g1832 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 304 IPR045174 GO:0003700|GO:0006355
Vra7g1832 318 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Vra7g1832 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 11 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1832 Vra-Chr7 37637134 37639048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1832 20 120 C2C2-Dof Transcription Factor Family AT1G28310 71.569 4.57e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1832 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1832 - - var:108331965 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1832 7 37637134 37639048 Vra10g1300 10 18393060 18395221 PCT