Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1831 ATGGAACATGATCAAGCCAGAGAACAAAATACAAAAATTCATCTTCCTGTTGCTGCTGCTGCTGCTGCTTCTGCACCACCACCAAAACCACACCACAAATGTCCTCGCTGCAATTCCACCAACACCAAATTCTGCTACTTCAACAACTATAGTCTCTCGCAGCCTCGCCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCAGGGTGGAACCTTCAGAAACATACCCGTTGGTGGTGGTTCCCGTAAGCCCAAACGTGCCAAAACAGATTCTTCACCCTCCAATTCACTCACACAACCACACTCCAATTTCAAGAACCCTTCTCCGTCACTCTCCATGCCTCACTCAACTAGCCCTTACCATCAACTTGGAGGAGGAGGAGGAGGGTATTTGTCTTCTCTGCCAACGCTTCATTCTCTGACCCCATCACAGCCTTTCAATCACTACCTGAACGTTGCGGGCTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTTCTTTTCCTCCTCGGTTTCATCACGTGGGAATCAGAGAGAGGGTGGAATCTTTCTATCCTGCACCACAGCGTTTGCTACCATCAAACGTGTCTGGTGGCAGTGCTGCTGCAGCAGCAGCAGCACAAAGCTTGATTACTGATGTTTCGAGTACAAACCTTACGGCTGGTTCTGATGTCTCTTTGTGGAGTGCTACTATCAACGCCACTTCCATCAGTGGAAACTCTGATCGCAACAATGTCAAAGGTGGTTCTTCTTCCTCTTTGATCCCTAATCATTGGCTTCATCCTCCAGGGTACCGTCCTCCTCAATAA 819 0.4847 MEHDQAREQNTKIHLPVAAAAAASAPPPKPHHKCPRCNSTNTKFCYFNNYSLSQPRHFCKTCKRYWTQGGTFRNIPVGGGSRKPKRAKTDSSPSNSLTQPHSNFKNPSPSLSMPHSTSPYHQLGGGGGGYLSSLPTLHSLTPSQPFNHYLNVAGSSSILPLLSGFNAAASFPPRFHHVGIRERVESFYPAPQRLLPSNVSGGSAAAAAAAQSLITDVSSTNLTAGSDVSLWSATINATSISGNSDRNNVKGGSSSSLIPNHWLHPPGYRPPQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1831 272 MobiDBLite consensus disorder prediction 241 272 - -
Vra7g1831 272 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 272 IPR045174 GO:0003700|GO:0006355
Vra7g1831 272 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Vra7g1831 272 MobiDBLite consensus disorder prediction 73 124 - -
Vra7g1831 272 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Vra7g1831 272 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Vra7g1831 272 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 5 272 - -
Vra7g1831 272 MobiDBLite consensus disorder prediction 241 260 - -
Vra7g1831 272 MobiDBLite consensus disorder prediction 90 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1831 Vra-Chr7 37620617 37621477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1831 12 211 C2C2-Dof Transcription Factor Family AT3G55370 36.239 3.96e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1831 zf-Dof 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1831 - - gmx:100814555 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1831 7 37620617 37621477 Vra10g1301 10 18410043 18412113 PCT