Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1790 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAGGCTCAGGACTTGGAACTCCCAAAGCCTAATCTGATGAGGAAACAACAGCAGCATCACCAGCAGCAAACTCAAACTCAGCCTTCAGAGTCTTTGAAGTGCCCGAGATGTGACTCTACCAACACCAAGTTTTGTTACTACAACAATTACAATAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCGGTGGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAACCAAACACTCCAACACCATCTTCCACCACTGCCACTACCACCCCGACAACAGCCAGCCCTTCTACTTGCACTGCCACCGTCACAACCTCAATTGGCAACATGGATGCTTTGCTGGGTAGTAGCCACATGACAATTCAAACTCCTCTTGCAGATGATCAGAAACACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACCACCTTTGCTGCTACAACAGAATCTGATGAACGCGAGAGACTTAGACGGCAAAGATTTTGGTATCGGTATTGGTATTGGTATTGGTAATAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCATGTTCGGTGTCAAACTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGGAGTTCAAAGCAGCGGAAGAACCAACCATCAACAGTACTGCTATAGCGCCTAGCACAGGTGGCACTAACACACAGCCATGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTTTTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGACATCAAACCCTGA 969 0.4644 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQHHQQQTQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTPTTASPSTCTATVTTSIGNMDALLGSSHMTIQTPLADDQKHMASSLYQALIRPPPLLLQQNLMNARDLDGKDFGIGIGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSNSLRSSNVYNYGEEFKAAEEPTINSTAIAPSTGGTNTQPWEIAATSGVGLGTSNFWNWEDFDSLVSTDLKDPWDDSDIKP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1790 322 MobiDBLite consensus disorder prediction 109 129 - -
Vra7g1790 322 MobiDBLite consensus disorder prediction 32 54 - -
Vra7g1790 322 PANTHER OS06G0284500 PROTEIN 37 203 - -
Vra7g1790 322 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Vra7g1790 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 203 IPR045174 GO:0003700|GO:0006355
Vra7g1790 322 Pfam Dof domain, zinc finger 51 104 IPR003851 GO:0003677|GO:0006355
Vra7g1790 322 MobiDBLite consensus disorder prediction 90 129 - -
Vra7g1790 322 MobiDBLite consensus disorder prediction 34 54 - -
Vra7g1790 322 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1790 Vra-Chr7 37064356 37066552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1790 52 109 C2C2-Dof Transcription Factor Family AT1G28310 84.746 4.07e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1790 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1790 - - gmx:100818111 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1790 7 37064356 37066552 Vra10g1341 10 18725870 18727275 PCT