Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1633 ATGGGTTTTTCCTCTCTCCATGTCTGCATGAATTCATCAGATCAATGGCTGCAGGGCACAATTCACGAGGAATGTGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGGTAAGACCCTCACAAGAGCAAGCCCTGAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATTCCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAATGACCACCAACCAGCTATTAATCAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTCAACAATATACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGATAGTAAGTATAGCATGGGGATGCTAGAGAACCCTGGGCATATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATGATTAGGGGTTCAACTAGGAGTTTGGATGTTCTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGGGGCATGTCCCTTGATGGAGGCATTAGCAATGTCGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTCATAACATCCTTAACGGTTCAGTTGACGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCAGGCTTGCTCTGAGGCTGAGAAAGTGTCATTGGGATATCTTAACGGTTCAGGATCATGGAGTGGCTATGGATCTTCAACAACAAACCCTTTGGTCTAG 990 0.4525 MGFSSLHVCMNSSDQWLQGTIHEECGVDSSSPSADMLPCSRPMTERRVRPSQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINQNQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNILGTNAGVLGNPNFMDSKYSMGMLENPGHIDFMESGLDGMNMIRGSTRSLDVLENSDMSVGGGGVGLGDMSGYNGLPLNYQGLSSAAFGGMSLDGGISNVGSYIMDSCQRLMLPYDGGHNILNGSVDVKPNPKLLSLEWQDQACSEAEKVSLGYLNGSGSWSGYGSSTTNPLV* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1633 329 MobiDBLite consensus disorder prediction 27 51 - -
Vra7g1633 329 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Vra7g1633 329 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Vra7g1633 329 PANTHER - 13 320 - -
Vra7g1633 329 MobiDBLite consensus disorder prediction 107 131 - -
Vra7g1633 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 320 IPR045174 GO:0003700|GO:0006355
Vra7g1633 329 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1633 Vra-Chr7 34792699 34795304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1633 1 300 C2C2-Dof Transcription Factor Family AT5G62940 41.888 2.84e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1633 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1633 - - gmx:100815061 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1633 7 34792699 34795304 Vra7g1633 7 34792699 34795304 ECH
Vra7g1633 7 34792699 34795304 Vra5g0508 5 6056282 6058050 PCT