Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1114 ATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCACCAGAAAGAAAACCCTCCATTAATGGAGGGGGTGCAGGAGGAGGAGGAGTAGTAGGAGGAGGAGTTTTACTCCCAACTGCACCATCTCCCTCTTCTCTTCCTTCTTCCTCAACCAATAATGTTACCCTCACATCCACCACCACAGCAACTACTGCTACCACCACCACCACCACTCCCACATCGGAAAATCAAAACCTCAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAAACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGTGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAGAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTGATTGGGCACATGGTGAGCACTGAGCCCTTGGTTTCAAATACGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACATCAGAACAGTGGAATTCAAGAGATTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCGGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAAACAACATCGGTAGCTGGGGGTGAATTCGGATACTGGAACGCTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCCGGTGCATATCCGTAA 1038 0.4981 MIQELLGGASLIAPERKPSINGGGAGGGGVVGGGVLLPTAPSPSSLPSSSTNNVTLTSTTTATTATTTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPSPMSIKEEGTLIGHMVSTEPLVSNTLLNHRTLGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHQNSGIQEIYQKLRSSSANNYCGDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNAPTFSWSDLPTTNGAGAYP* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1114 345 MobiDBLite consensus disorder prediction 41 80 - -
Vra7g1114 345 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Vra7g1114 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 341 IPR045174 GO:0003700|GO:0006355
Vra7g1114 345 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 30 341 - -
Vra7g1114 345 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Vra7g1114 345 MobiDBLite consensus disorder prediction 34 80 - -
Vra7g1114 345 Pfam Dof domain, zinc finger 77 133 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1114 Vra-Chr7 27003447 27005051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1114 48 164 C2C2-Dof Transcription Factor Family AT5G60200 53.333 1.52e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g1114 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1114 - - vra:106766838 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0613 11 4844896 4847211 Vra7g1114 7 27003447 27005051 PCT