Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1017 ATGCCGGTAGCGAGGCGAGAGACTTGCGATGCAAGAGTGATTGCTCACGTAGACATGGATTGCTTCTACGTTCAAGTGGAACAGAGAAAACAACCAAATTTAAGAGGCTTGCCCACTGCAGTCATACAGTACAATTCATACAAAGGTGGGGCTCTCATTGCTGTCAGCTATGAGGCTCGCAGATGTGGCGTCAAACGTTCAATGCGAGGCGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTTCCGGTAGCACGTGGTAAGGCTGATCTCAACTCATATAGGAATGCGGGTTCAGAGGTCGTTTCAGTTCTTTCGCAAAAGGGTCGCTGTGAGAGGGCTTCGATTGATGAGGTATATCTTGATCTAACTCATGCTGCTGAAACCATGCTGATGGAAACATCTCCAGAAAGCATGCAAGACTTTGAGGAGGAAGTTCTCAAGTCTCATGTTTTGGGGCTGGAAATTGAGGATGGAAGTGATGCCAAAGAAGAGGTTAGGAAGTGGCTTTGTAGAAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTTAGTGACCTCAGGATGCAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCCGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCTCAACAAACTGTTGTGCCACACTCATCAGTTGAACAGTTACTTGCGACGTTACCAATAAAGAAAATGAAACACCTTGGGGGAAAGTTGGGGAGTTCTTTACAGAGTGATCTTGGCATCAATACCGTTGGAGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGAACTTGGTTGTGGAATATTTCAAGAGGAATCAATGGGGAAGAAGTTGAGGGGCGACTACTTCCCAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACAATTGATTCTGTTCAACATTGGCTTAATCAACTGTGTGAAGAGCTGAATGAACGCCTTAATTCTGATCTGAATCAAAACAAACGGATTGCACAGACACTGACGCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCACTTAGAAAGTTCCCTTCTAAATCTTGTCCTTTAAGATATGGGACTAGAAAGATCCAAGAGGACGCCCTAATTCTTTTTCAAGCTGGGTTGCGTGAGTTTTCGGATTCCTACAGCTTTAAGGTTCATGGAAACGAAAATAGCAACTGGGGAGTGACATCACTTTCTGTTTCTGCGAGCAAAATTGTGTCTATACCATCTGGGACACATTCAATTGCTAAATACTTTGGAGGGCAATTTCCATCCAGTTCTACATCAAATCCATCAAAAGACGTTCTCATTGATGAAGCTGTACCATCATCACCTTCAGGCAGTGAAAATTGTACGGGAATGGTTCCCTATGATTTACAGCTTCAACATCCTCATTACACAGAAATGAAGCATTTTAGTGCATGTTTGGATCCACAGGATCCATTGAATCATTTATCCAGTAAAGCGGAAGGCTTGACTGAAGAATCCTCCTTCATGTCACCCTCTGGAAGTGAAGACAGAATGACAGGCGGTGAGACACATAGAGTTTTACCTGCAAAAGATCCTAGTCATGTTTCAAATGTCTCTAGTTTGAAAGCAGTAGGGAAGAAAAGGAGAGCAGGAAAGATGCTTCATGAGAATTGTTCAATTATAAATATCTTCAATAATTACCATAATTCCCGGTCTTCATTGGAGCAGAAGGATGTTTCAAATGCCCACGATTTTAAAATATCGCTTGGATCTCAGTCTGCTGATGATAGTTATTCAACTTGTAATGAAGAGATTGATACCGACAAGGATGGATGTAGTGTAGGTGTATCACAAGGGAGGGAAGCTTGGAGTAGTTATAATATTGATGAAATCGACCCCTCTATCATTGATGAATTACCACCAGAAATTCAGCAAGAGTTTCGAACCTTGCTTAGGCCACAAAAGCGGCCCAATGTGGCTAAACGAGGTTCTAGTATTAAACACTATTTCTTACCTGACAAAAGTAGATAA 2094 0.4284 MPVARRETCDARVIAHVDMDCFYVQVEQRKQPNLRGLPTAVIQYNSYKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVYLDLTHAAETMLMETSPESMQDFEEEVLKSHVLGLEIEDGSDAKEEVRKWLCRSDASYQDKLLACGALIVSDLRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEQLLATLPIKKMKHLGGKLGSSLQSDLGINTVGDLLQFSEEKLQQWYGINTGTWLWNISRGINGEEVEGRLLPKSHGSGKTFPGPQALKTIDSVQHWLNQLCEELNERLNSDLNQNKRIAQTLTLHARAYKTGDSDSLRKFPSKSCPLRYGTRKIQEDALILFQAGLREFSDSYSFKVHGNENSNWGVTSLSVSASKIVSIPSGTHSIAKYFGGQFPSSSTSNPSKDVLIDEAVPSSPSGSENCTGMVPYDLQLQHPHYTEMKHFSACLDPQDPLNHLSSKAEGLTEESSFMSPSGSEDRMTGGETHRVLPAKDPSHVSNVSSLKAVGKKRRAGKMLHENCSIINIFNNYHNSRSSLEQKDVSNAHDFKISLGSQSADDSYSTCNEEIDTDKDGCSVGVSQGREAWSSYNIDEIDPSIIDELPPEIQQEFRTLLRPQKRPNVAKRGSSIKHYFLPDKSR* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1017 697 Gene3D - 247 303 - -
Vra7g1017 697 Gene3D - 89 233 IPR043128 -
Vra7g1017 697 Gene3D - 21 88 - -
Vra7g1017 697 MobiDBLite consensus disorder prediction 520 542 - -
Vra7g1017 697 PIRSF DNA_pol_eta 6 692 - -
Vra7g1017 697 ProSiteProfiles UmuC domain profile. 14 254 IPR001126 GO:0006281
Vra7g1017 697 PANTHER DNA POLYMERASE ETA 6 683 - -
Vra7g1017 697 Pfam impB/mucB/samB family 17 222 IPR001126 GO:0006281
Vra7g1017 697 PANTHER DNA POLYMERASE ETA 6 683 - -
Vra7g1017 697 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 310 438 IPR036775 GO:0003684|GO:0006281
Vra7g1017 697 SUPERFAMILY DNA/RNA polymerases 10 305 IPR043502 -
Vra7g1017 697 MobiDBLite consensus disorder prediction 520 538 - -
Vra7g1017 697 MobiDBLite consensus disorder prediction 675 697 - -
Vra7g1017 697 Gene3D - 305 438 IPR036775 GO:0003684|GO:0006281
Vra7g1017 697 Coils Coil 340 360 - -
Vra7g1017 697 Pfam impB/mucB/samB family C-terminal domain 311 439 IPR017961 GO:0003684|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1017 Vra-Chr7 24623760 24630227 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1017 7 24623760 24630227 Vra7g1017 7 24623760 24630227 ECH