Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0706 ATGTCAGAGGTTAAAGGCTCTGCCATAAAGCTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACCTCCGACTCTTGCTTCTCCTTCATCTTCCTCTTCTCCCCCGGAACCTACCTCTGCAACACAACAACACCAAGAACACCAGGAACCACTAACGAAAGAACTTACCTCACTTAAAGACGATGATGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGTTTCAGGCATACTCGAGAATCCAAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGCGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAAGATACTTCCATGTCCGCGGTGCAATAGCATGGATACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGCTGTATCACATTACCGACAGATATTGATGCCGGAGGCATTTCAGGGAGCTACACTTAATGCCTCCAGTGGATTGCATAATGCCCTTTTGGGGAATGGAGCAGCTGTGTTGACTTTCGGTCCTGACACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAATGGTTCTGTTGATGGGTGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCAGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTCCTACATTTTGCCAACCTAGGTACCCTTTATCATTCTATACTACACCAGCATATTGGAGTTGTATGCCACCCTCTTGGAATATGTCATGTATGTCGTCCCAATCTTCTGTCAGCAACACTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAACAAACAGAAAGAAATACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGACGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGGGCCAGTTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGAGATGAACCACAGGGTTGAAGCATCACCACAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTCACCTTCCATGAACGGACCTGA 1371 0.4639 MSEVKGSAIKLFGRTISLPHNDSSAPPTLASPSSSSSPPEPTSATQQHQEHQEPLTKELTSLKDDDASSHETTEDLKSAVSGILENPKTPSAETETSLQKSPENEEQSETSASEEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAAVSHYRQILMPEAFQGATLNASSGLHNALLGNGAAVLTFGPDTPLCDTMSSVLNIAERAQSCVSNGFHATEPNGSVDGCGHSTGVSVSTTSNSSHASSHESVDKRVEGFTPQLSYFPGAPWPYPMPPPTFCQPRYPLSFYTTPAYWSCMPPSWNMSCMSSQSSVSNTVSAPILGKHSRNGNIITPSNKQKEIHNSSEHNFLIPKTLRIDDPGEAAKSSMWSKLGTKNDRASSGGLFQAFPPKGNEMNHRVEASPQLQANPAALSRSLTFHERT* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0706 456 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 456 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 433 449 - -
Vra7g0706 456 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Vra7g0706 456 PANTHER CYCLIC DOF FACTOR 2 1 456 IPR045174 GO:0003700|GO:0006355
Vra7g0706 456 MobiDBLite consensus disorder prediction 84 98 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 256 280 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 417 456 - -
Vra7g0706 456 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Vra7g0706 456 MobiDBLite consensus disorder prediction 99 123 - -
Vra7g0706 456 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Vra7g0706 456 MobiDBLite consensus disorder prediction 256 284 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 17 50 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 15 123 - -
Vra7g0706 456 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0706 Vra-Chr7 14098087 14101946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0706 75 454 C2C2-Dof Transcription Factor Family AT5G39660 43.890 5.12e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g0706 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0706 - - gmx:100813315 640.958