Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0274 ATGTCCCAAGTTAGAGATTCTGCAATAAAGCTTTTTGGAGCAGATATTCATACTACACATACTCCCATTAAGCCAACCACACTTTTCCCAGATTTACACTCATTGACTCGGATTCAGCCTCTGCCTCAACCCATCATCGTCATGAATGGACTTGAAGAATCAACTAATGATGAAGTGGATGTTCCTTTGAATGAAGAAGTTTCTAGCAAACAGACTGATTCTCAAGATGGTAATGATACTCCAAGAGACACGTGTAAAAATCCTACACTGAAACTGGTGGGCAAAGTAGTTCATAGGACTAATGAGCACAGGAATGCTAAAAGAAATATTGATCAGGAAAAGGTTTTTAAGAAGCCAGACAAGGTTCTGCAATGTCCTCGCTGCAATAGTTTGGAAACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCTAGACATTTCTGTAAAAATTGCCAAAGGTATTGGACAGCTGGAGGGGCGATTAGAAATGTTCCTGTTGGGGCTGGTAAGCGTAAGAATAAGCACTCAACTCTGCAGTATTATCAGAAACCTGTGACTCCTGATGGTGCATCTGCGATCCAGACACATTCCGGTGCTTCTAGTGATGATATGATTCTGTCATCTAATGAACTTTCTGTGACTTCAAGACCTATCAGAGAAAGGGAGGAAAATCCTCTTAGTGAACCCGTAGAAACTGTGTTGAGTCTCAATGGCCAAAGAAAATTTGATGTGGACTTTCCCACTGTCAAAGATGGTGAGGACCCTTCCAGCTCCTCTATGAGATCTAATGAAATGGAGCAGGTTGGTTTGGCACAACACTTTAATGGTTTAATTCCCTTACATTCATTTCATTATCATTCTGTCCCTTCATGGTCTTATCAATGGAATCCATGTTGGAATGTCAAGGAGTTTAGGTCCAGTAGCACTAGTTACACAGGTTCTCCAACCATGATGGCAGTTTCTGGCTTCTCCATACCAACGGTAATGCAGCCTGCAGCACCTTATTCGTATTCAGGTTTCATATCAAACTTAGCTGGCCAAGAGGAAGAGTCTTCATTGATTGGATCTGCATTTAGTGGCATCTCATTGTCTTCATCTTCTGTCAGCAATAGTACTAGTTCTGGTAATAGATCCCCAACCTTGGGAAAACATTCCAGAGATGGAAGCACACCGAAGGAAGCTGCAATGAAACAGAACCTTTGGGTGCCTAAGACTGTTAGAATTAACGGTCCAGAAGAGGCTGCAAACAGTTCTATATGGACAACTTTGGGAACAAAATCTGAACAGAACAAAATCATTTTAAAAGGAAGTGTCTTTAAATCATTTGAGTCTAAGACAAGTGCTGATGATAATCAAATTCGAAGGACAAACCCTGCTGCTTTCTCACGCTCTGAATCTTTTCAGGAAAGCATGTGA 1422 0.4093 MSQVRDSAIKLFGADIHTTHTPIKPTTLFPDLHSLTRIQPLPQPIIVMNGLEESTNDEVDVPLNEEVSSKQTDSQDGNDTPRDTCKNPTLKLVGKVVHRTNEHRNAKRNIDQEKVFKKPDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHSTLQYYQKPVTPDGASAIQTHSGASSDDMILSSNELSVTSRPIREREENPLSEPVETVLSLNGQRKFDVDFPTVKDGEDPSSSSMRSNEMEQVGLAQHFNGLIPLHSFHYHSVPSWSYQWNPCWNVKEFRSSSTSYTGSPTMMAVSGFSIPTVMQPAAPYSYSGFISNLAGQEEESSLIGSAFSGISLSSSSVSNSTSSGNRSPTLGKHSRDGSTPKEAAMKQNLWVPKTVRINGPEEAANSSIWTTLGTKSEQNKIILKGSVFKSFESKTSADDNQIRRTNPAAFSRSESFQESM* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0274 473 MobiDBLite consensus disorder prediction 66 87 - -
Vra7g0274 473 MobiDBLite consensus disorder prediction 369 387 - -
Vra7g0274 473 Pfam Dof domain, zinc finger 120 177 IPR003851 GO:0003677|GO:0006355
Vra7g0274 473 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Vra7g0274 473 PANTHER CYCLIC DOF FACTOR 2 46 473 IPR045174 GO:0003700|GO:0006355
Vra7g0274 473 MobiDBLite consensus disorder prediction 369 410 - -
Vra7g0274 473 MobiDBLite consensus disorder prediction 446 473 - -
Vra7g0274 473 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 46 473 - -
Vra7g0274 473 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0274 Vra-Chr7 4243961 4247149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0274 114 473 C2C2-Dof Transcription Factor Family AT3G47500 36.524 2.16e-54 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vra7g0274 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0274 - - vun:114177215 792.341