Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0115 ATGCAAAACAACACACCTTCAAATTCAAAGCCTTCAACTTCAATTATGCGAACGCTCTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTTTTCTGCGCCGCCGACGAGGCCGCGCTGTGCCGTGCCTGTGATAAGAAGGTTCACATGTGTAATAAGCTAGCAAGCCGGCATGTAAGGGTTGGTCTAGCAAGTCCAAGCGATGTGCCGCGCTGCGACATTTGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGCGATATGATAGTTCATGTTGGAGGTAAAAGGACACATGAGAGATATCTTCTTTTTAGGCAGAGAGTTGAGTTTCCAGGAGAAAAACCTGGTAAGTCAGAAAACCCAGCTTCACAACCTCTGGATCCAGGTGAGACTAAAAGAGGACAAAATGCACTGCCCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCTCTGAGTCTGACGCCAGAACCAAATGCTGATGAGCATGCCATGATGGGAACCAAAATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAGCCAACATCAAATAATCAGGTGAGGGAAGGGTAG 609 0.4614 MQNNTPSNSKPSTSIMRTLCDACESAAAIVFCAADEAALCRACDKKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHERYLLFRQRVEFPGEKPGKSENPASQPLDPGETKRGQNALPKIKMGEKQQNHRMPLSLTPEPNADEHAMMGTKMIDLNMKPQRIHEPTSNNQVREG* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0115 202 ProSiteProfiles Zinc finger B-box type profile. 66 111 IPR000315 GO:0008270
Vra7g0115 202 SUPERFAMILY B-box zinc-binding domain 63 102 - -
Vra7g0115 202 CDD Bbox1_BBX-like 19 62 - -
Vra7g0115 202 Pfam B-box zinc finger 67 107 IPR000315 GO:0008270
Vra7g0115 202 Pfam B-box zinc finger 18 57 IPR000315 GO:0008270
Vra7g0115 202 MobiDBLite consensus disorder prediction 120 171 - -
Vra7g0115 202 PANTHER B-BOX ZINC FINGER PROTEIN 22 16 198 - -
Vra7g0115 202 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vra7g0115 202 SMART bboxneu5 66 111 IPR000315 GO:0008270
Vra7g0115 202 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vra7g0115 202 MobiDBLite consensus disorder prediction 183 202 - -
Vra7g0115 202 CDD Bbox1_BBX-like 71 111 - -
Vra7g0115 202 Gene3D Classic Zinc Finger 16 110 - -
Vra7g0115 202 PANTHER SALT TOLERANCE-LIKE PROTEIN 16 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0115 Vra-Chr7 2076094 2079630 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vra7g0115 zf-B_box 1.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0756 11 6151563 6153584 Vra7g0115 7 2076094 2079630 PCT