Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2074 TGCATGGCATCTTTGGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCTTCAATGTGCCTCAGTGAAGGCCAAAGTGATGGGTCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATATCTCAAGGCAGCACAGGAGTTACTTGATGAAATAGTTAATGTTCGAAAGGCTTTGAAGCAAACAGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGCCAATCGGGGCAGGTATCTTCATGTCCCAATAATTCTGCTGCAAACACCTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTATTGGACAAGAAGACAAAACTTTTATCCATGTTGGACGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATGGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCTTACACCGCGCTAGCCTTGCGCACAATATCACGCCACTTTCGGTGTTTGCGCGATGCCATTAGTGGCCAAATTCAAGTTACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTACGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGCGATTCCGAGATGAGCAGCAATCTATTGCCATCAGAGAACGCAGTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGTTATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCGGAGTTGGACAGAGGGATTCAAAATAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGATGGCCAAAGGTTCAACATCAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACAGGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGTGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGGAAAGCAGCAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1449 0.4444 CMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQVSSCPNNSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQMVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSENAVKAPRDDVQSSDSKREESQDNLITVDDSVIQHHGLKLDHASELDRGIQNSDHGENAMDPRIGKLQDGQRFNINNSNSSYYGEGCIIAPTTATYDLSELGNIGVGGQVSLALELRNCESEGFGVSNDDMHRRRKKTLASSPEADLLDYHFTDQGKQQNKFGNPHLLHEFVV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2074 482 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 445 - -
Vra6g2074 482 SMART HOX_1 227 291 IPR001356 GO:0003677
Vra6g2074 482 MobiDBLite consensus disorder prediction 86 113 - -
Vra6g2074 482 Coils Coil 48 68 - -
Vra6g2074 482 CDD homeodomain 227 288 IPR001356 GO:0003677
Vra6g2074 482 Gene3D - 224 301 - -
Vra6g2074 482 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Vra6g2074 482 MobiDBLite consensus disorder prediction 76 113 - -
Vra6g2074 482 MobiDBLite consensus disorder prediction 317 334 - -
Vra6g2074 482 MobiDBLite consensus disorder prediction 297 334 - -
Vra6g2074 482 SMART prehox3 36 186 IPR006563 -
Vra6g2074 482 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Vra6g2074 482 Pfam Associated with HOX 42 185 IPR006563 -
Vra6g2074 482 SUPERFAMILY Homeodomain-like 228 294 IPR009057 -
Vra6g2074 482 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 26 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2074 Vra-Chr6 37364630 37367605 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra6g2074 POX 1.5e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2074 6 37364630 37367605 Vra6g2074 6 37364630 37367605 ECH