LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra6g2067	ATGCTGAAATCAGGCATGAGAATGAATGCTAGTAAGCAGGTGAAAAAATCTGCAAAAGCGAGTTCCAGAAAGGGGTGTATGAGAGGCAAAGGAGGCCCTGAGAATGCCAGTTGCACCTTCAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCTAACGGTGGTGCACGCCTCTGGCTAGGCACATTTGAGAACTCTGTAGAGGCTGCCATGGCTTATGATTGTGCAGCACGTCAGCTCTACGGATCTGATGCAAAACTCAACCTCCCAGAGCTTCATATGGCCTTGGCCTTGAATTTCCAGTTTCCACCACCAAACCCTCAGATCCCTCACATGCCACCATCACCACAGCTTCAACACTCTCAGATTCCCCCTCCCAGTGACATTTCCAATCTCCCCCCCTTTGATTTCATCAACAACCTCACCGATCACACCAACATCATGTTCAACCCTGTGCTCTCCATGACTCCTCAGCATGCAATTGCTGATTCTGCGCCAGTGTATGCCAGCGACTCTCATGTCGCAATTCCCTATGAATCCACCACCATCCCGATGGCGATTCACCCCTCCAACCCCTTGGATATCAACGACGACAAGGTTGATCCTTTTGGGGGGTCATCCAATGTCATTCCTGACCCTATGTTTGATGATTCCATCTGGGCTGAAGCTGCTATGTCTCTTGGTTTCCCTCTGATACCAGATGCTGCAGGAATTAATGAAGCTGAAACCTTTCTTGAAGTGGGTCCTTGGGACTCTCTGCAAACTCCCTGGTGCATGTAA	798	0.5013	MLKSGMRMNASKQVKKSAKASSRKGCMRGKGGPENASCTFKGVRQRTWGKWVAEIREPNGGARLWLGTFENSVEAAMAYDCAARQLYGSDAKLNLPELHMALALNFQFPPPNPQIPHMPPSPQLQHSQIPPPSDISNLPPFDFINNLTDHTNIMFNPVLSMTPQHAIADSAPVYASDSHVAIPYESTTIPMAIHPSNPLDINDDKVDPFGGSSNVIPDPMFDDSIWAEAAMSLGFPLIPDAAGINEAETFLEVGPWDSLQTPWCM*	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra6g2067	265	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	14	249	-	-
	Vra6g2067	265	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Vra6g2067	265	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355
	Vra6g2067	265	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Vra6g2067	265	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Vra6g2067	265	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Vra6g2067	265	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Vra6g2067	265	MobiDBLite	consensus disorder prediction	1	33	-	-
	Vra6g2067	265	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	14	249	-	-
	Vra6g2067	265	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Vra6g2067	265	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra6g2067	Vra-Chr6	37303083	37304757	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vra6g2067		AP2	1.4e-12	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g2067	6	37303083	37304757	Vra6g2067	6	37303083	37304757	ECH
	Vra6g2067	6	37303083	37304757	Vra5g1617	5	22591116	22593001	PCT