Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2063 ATGGCTCGCTACTCACTCTGCGCTCTCCTCCTCTTCGCCGCCGTGGCCGTCGCCGCTGGCGCCAACACCGACGCCGACGACATCCTGATCCGTCAGGTGGTGCCAGAGGGCGAGGTGGAGGACCACCTGCTGAACGCGGAGCACCACTTCTCGAACTTCAAGGCGAAGTTCGGGAAAACCTACGCGACGAAGGAGGAGCACGATCATCGCTTCGGAGTATTCAAGTCAAACCTGCGCAGGGCGAGGCTTCACGCGCAACTCGACCCCTCCGCCGTCCACGGCGTCACCAAATTCTCCGATCTCACTCCGGCGGAGTTCCATCGCCAGTTCCTCGGTCTCAAACCGCTCCGCTTGCCGGCGAACGCGCAGAAGGCCCCCATCCTCCCCACCAACAATCTCCCAAAAGATTTCGATTGGAGAGACAAAGGAGCCGTCACTAACGTCAAGGACCAAGGTGCGTGTGGATCGTGTTGGTCTTTCAGTACCACGGGGGCATTGGAAGGAGCTCACTTTTTGGCTACTGGTGAGCTCGTGAGTCTTAGTGAGCAACAGCTTGTGGATTGCGACCACGTGTGTGATCCAGAAGAATATGGAGCGTGTGACGCAGGCTGTAATGGTGGTTTGATGAACAACGCATTTGAGTACATACTTGGGGCTGGGGGAGTACAGAGAGAAGAGGACTATCCATACACTGGAAGAGATAGCTCCTGCAAATTTGATAAAAGCAAAATTGCAGCTTCTGTAGCTAATTACAGTGTGATTTCCCTTGATGAAGATCAAATTGCTGCAAATCTTGTGAAGAATGGCCCTCTTGCAGTTGCCATCAATGCAGTTTATATGCAGACATACATTGGTGGTGTCTCATGTCCATACATCTGTGGGAAGCGTTTGGATCATGGGGTTCTTTTAGTGGGTTATGGTGAAGGTGCATATGCTCCCATTCGTTTTAAGGAAAAGCCTTACTGGATCATTAAGAATTCGTGGGGCGAGAGCTGGGGAGAGAATGGATACTACAAGATCTGCAGAGGTCGAAATGTATGTGGAGTAGATTCCATGGTCTCAACTGTAGGTGCTATACATACATCCAGGCAGTAA 1095 0.5215 MARYSLCALLLFAAVAVAAGANTDADDILIRQVVPEGEVEDHLLNAEHHFSNFKAKFGKTYATKEEHDHRFGVFKSNLRRARLHAQLDPSAVHGVTKFSDLTPAEFHRQFLGLKPLRLPANAQKAPILPTNNLPKDFDWRDKGAVTNVKDQGACGSCWSFSTTGALEGAHFLATGELVSLSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFEYILGAGGVQREEDYPYTGRDSSCKFDKSKIAASVANYSVISLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICGKRLDHGVLLVGYGEGAYAPIRFKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVGAIHTSRQ* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2063 364 CDD Peptidase_C1A 134 356 IPR039417 -
Vra6g2063 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Vra6g2063 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 358 - -
Vra6g2063 364 SMART Inhibitor_I29_2 50 106 IPR013201 -
Vra6g2063 364 PANTHER CYSTEINE PROTEASE RD19C-RELATED 24 358 - -
Vra6g2063 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 321 340 IPR025661 -
Vra6g2063 364 Pfam Papain family cysteine protease 133 355 IPR000668 GO:0006508|GO:0008234
Vra6g2063 364 SUPERFAMILY Cysteine proteinases 47 355 IPR038765 -
Vra6g2063 364 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Vra6g2063 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Vra6g2063 364 Gene3D Cysteine proteinases 20 356 - -
Vra6g2063 364 SMART pept_c1 133 357 IPR000668 GO:0006508|GO:0008234
Vra6g2063 364 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Vra6g2063 364 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Vra6g2063 364 PRINTS Papain cysteine protease (C1) family signature 321 327 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2063 Vra-Chr6 37252484 37255132 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2063 6 37252484 37255132 Vra6g2063 6 37252484 37255132 ECH
Vra6g2063 6 37252484 37255132 Vra5g1746 5 23625526 23627231 PCT