Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2062 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGACGAGGAGGATCACAGACAAAACAACAACAACAATAACAGTCAATTTTTGTTCAGAAACGTTAACGACGAGATCTACAACACCAACAAGGGCTTTGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGTGTGGGCCCTAGTCGCAGAAACAACACCGCCAACAACAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGACTCCAACCGCTTCGGCTTCACGGTCATGAGGTCCGGAGGCGGCGTGGGAGGCGGCGGAGGCGCCGGCATGAACTGTCAGGACTGTGGTAACCAGGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACTCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAGAATCAACCACCACAGTTTCGTGGAGATCACTCCAAACGACACAGGGAAAGTATCGAAGCTGTTGCAGCCGGTGGTTCCCTCGCTTGTGCTCCAGTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTGAACTCGCCAGCGGTGTTTCGATGCGTCAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCGTATCAAACCGCCGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGTGGACGGTCCTTACGCCAGTGCAGGTTGCGAGGGTTCCTCCGGTGGCGGCGGTGAAGCTCGGCCACTCGCTCTCATGGCCGCCACAACCACAACAACAACAGCTGGAAACCCTTTTGACGCTTCACTCTACCCCGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 984 0.5407 MAGFFSLGGRHNKAEDEEDHRQNNNNNNSQFLFRNVNDEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNTANNSSSNNVNDDVSVSFSDDSNRFGFTVMRSGGGVGGGGGAGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQFRGDHSKRHRESIEAVAAGGSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVDGPYASAGCEGSSGGGGEARPLALMAATTTTTTAGNPFDASLYPAPMNAFMAGTQFFPPPRS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2062 327 MobiDBLite consensus disorder prediction 164 186 - -
Vra6g2062 327 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 217 265 IPR006511 -
Vra6g2062 327 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g2062 327 Pfam Domain of unknown function (DUF702) 117 266 - -
Vra6g2062 327 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 325 - -
Vra6g2062 327 MobiDBLite consensus disorder prediction 166 180 - -
Vra6g2062 327 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 119 161 IPR006510 -
Vra6g2062 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 325 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2062 Vra-Chr6 37243122 37246030 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vra6g2062 DUF702 9.4e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2062 6 37243122 37246030 Vra5g1795 5 23979060 23980303 ECH
Vra6g2062 6 37243122 37246030 Vra6g2062 6 37243122 37246030 ECH
Vra6g2062 6 37243122 37246030 Vra5g1795 5 23979060 23980303 PCT