Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2061 ATGAAGATCCAATGCGACGTCTGTGAGAAACACGATGCATCCGTCTTTTGTACCGCCGATGAAGCCGTCCTCTGCGACGGCTGCGACCACCGCATCCACCACGCCAACAAACTAGCCTCCAAACACCAGCGTTTCTCTCTTCTTCGACCCAAACAACACCCTCTCTGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACAGGGCGATTCTCTGCAGAGAGTGTGACGTGTCGATTCACTCTGCTAATGAACACACCCTTAAGCATGATAGGTTCCTTCTCACTGGTGTTAAACTTTCTGCTTCTTCTTCACCGCAAGAAACCCCTTCTCCTTCAAACTCCGCCCCTGATTCTCTTTTTGACGTTTCGCATCAAAAAACGATACCTTTATCTTCCACCGTCAGTAAGGTTGCTGTTGAAGCGGCGGCTTCCACCGGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAGGTTGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTCTGCAAGAGTGACGAAGTGTTGCCACGGTTTGATGGTGACATGGAGAGTCATCTGGGTACCTTTTCAACAGAGAACGTGGGAATATGGGTTCCTCAAGCGCCGCCACCTCTTCTGAGTTCTTCACAGATGAATAGAGCGATTGGTCAAAACGAAAACAACATCAAAGGTAGCAGATCGAGGTTGAAGGATGACAATTTCACTGTGCCACAGATTAGTCCTCAGTCAAATTCCAAGAGAGGGAGGTTTCTGTGGTAG 795 0.4855 MKIQCDVCEKHDASVFCTADEAVLCDGCDHRIHHANKLASKHQRFSLLRPKQHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSANEHTLKHDRFLLTGVKLSASSSPQETPSPSNSAPDSLFDVSHQKTIPLSSTVSKVAVEAAASTGASSISEYLIETLPGWQVEDFLDSYSVPFGFCKSDEVLPRFDGDMESHLGTFSTENVGIWVPQAPPPLLSSSQMNRAIGQNENNIKGSRSRLKDDNFTVPQISPQSNSKRGRFLW* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2061 264 MobiDBLite consensus disorder prediction 243 264 - -
Vra6g2061 264 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vra6g2061 264 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Vra6g2061 264 CDD Bbox1_BBX-like 55 98 - -
Vra6g2061 264 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 261 - -
Vra6g2061 264 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vra6g2061 264 SMART bboxneu5 51 98 IPR000315 GO:0008270
Vra6g2061 264 MobiDBLite consensus disorder prediction 232 264 - -
Vra6g2061 264 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Vra6g2061 264 CDD Bbox1_BBX-like 5 47 - -
Vra6g2061 264 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 261 - -
Vra6g2061 264 Gene3D Classic Zinc Finger 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2061 Vra-Chr6 37219828 37221626 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra6g2061 zf-B_box 3.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2061 6 37219828 37221626 Vra6g2061 6 37219828 37221626 ECH
Vra6g2061 6 37219828 37221626 Vra5g1796 5 23990962 23992238 PCT