Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2057 ATGGAGGGAGAGGATATTAGGTCTGGGACCAGGAAGAAGCGATCCAAGAAGGAAATTGGTTTTGACTCTGACGACGACGAGCCCATTGGCTCAATCTTTAAGCTGAAGAGGTCCAAGAGGAAGGGTAGTGGTGGTGGTGAGGCTGTTAGGGAGAAGGAGGATTTGGGGGGTATGGATGATAATGATACCTTGGCTAGCTTTAGGAAGAGATTGAAGGGTCCTAAAAGAGATCAGGGATCTGGGTTTGGAAGAGGAGCAAGTCCTGCCTTGCATGTGTCTGATGAAGAATTGGTTGGATTGGGAGCTAAGGATAAGGATGAGAAAGGGGTCGCCTTGGTGCCTGCTGGTGAGGACATGCAGATGGAGGATTCTTCTGATCAACACATGGAGGATTCGTTGTCTGCGATTTTTCACAAGGCGCAGTCTAGTTCTGCTAGGAAATCTCGTGGGATTTCGAGACAGAAAAGGGGGATTCAGAAGGTGGATAGTGGGTTGTGCCCTGGAGGTTTTGTGGAAACTGTGGATTCTGGGGTTGAAAGTAGATCCGGATCTGCTTCTGGCTCGAAATTGGTTGGGGGGAATGCCATGTCTGATGATGCTTTGCCTCAAGCATCTGAACCGGTTGTCACATCCATGGTGGAGGATCAGAAGTGTGTTAGTGACTGTTTTCAAGAGGGAACTGTAAAGGGTGAATGTGATTTGGACATTCCAGGTGGACGGAATCAGTCAAATGATGTCTACCGTGAAGATGGGAAGCAATTTTCTTGTGTTGTACAAGCTGAAGATATTTCTTGTGATTCTGACAAGAAGGTTGCACTGCAGGAAAGTGGTGTTATCAGTGGTGATTTACATAAGTTATCTTCTATGTTAAACGATGAAATAGTTGATACTGCCTCTCTCTCAAAACTGGGGGAAGGGGAAAGACAATTTACTGAGGTCCGGGAGCTTGAGAATAGATTGACTGATGACCTAGTACAAGCATGCAACAGTGCTCCAGAACATGATATTTCTACTTCTTCAGGGGAAAAAAATGTCTTGAAATCTTCGCACATTGAACCCTTGATTAAATCAACTGAAAATGCTTTGAATGAGAATAATGATATGGTTTCTGGAAAAGATTGTCAGGAATTCTCGAGTAATGGAGCTCTAAAGTTATTTGGATGCCATATGGAAGCAGATGGAGCTGGAAAATCAGAAACTGAGTTTGTTTCTGATAGAAATTTCTGTGATTATAGTAATTTAGATACAAAGGCCGAAGTGCATGATTTTGTTCTAGGTTTTTCACCTAAAAGAAATGATGTAACTGTCAGTGGTTCTTCTATGGTGTCTAATGAAGCTGATTTGGCCGCCCACTCAAATCATCCCGAGAAACCTGTAGAAGCTCGCAATATTCCAAAAGACCCCACTGCTTCTATTATGAAATGTAGCTCGGTTTTAGATCCAAATCAATCGGATGGATCCTCTCTTCAATCTTCAATTCCAGATGAAAATGGGAACTCTGCGGAATACCATGCCTCTGTGACTGATTTTGTCGATAATGATGGTAAAATATCAAGCATTCCAAGGTTGGTGCGAAAGACCAAAATGCGCAAGCATGGAGACATGACATATGAGGGGGATGCTGATTGGGAGGTTTTAATTAATGATCAAGCTCTAAATGAAATTCAAGTTATGACAGATGTTGAACGCACTCTTAGAACAAGAATGAAGCATGATTCCTCTTTGAATACTGGTGAAGACTCTGAAAATGTTGCAGTAGTGGCAGTATCAGCTGGGCTGAAAGCCCGTAAAGCCGGTCCAATCGAGAAAATAAAGTTTAAAGAGATCTTGAAACGAAAAGGTGGTCTCAAGGAATACTTGGATTGCAGAAATCAGATTTTAAGTCTTTGGAGCCGAGATGTCACACGTATTTTGCCTCTTGCTGAATGTGGAGTTAATGATACTGATTTTGAGGATGGAAGTCCTCGTTCTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAATTGCCTCCCAGAAGGAGAATGTTGGAAGTAGTGCAAGGCACTGTTATAAGCTGGTAAAAGAAAAAGGTTTTGAGGAAAGTCTCGCAGCTTCAATGGCCGACTCTGAAGATGAAGTTTCCTTTCTTGTTGGTCAGACTAAAATGTCAGATGCTTCCAATGAGGTTAACAATGGTATTAGAAAGGATTGCAATGACCTGACAATTGAAACTACAGAAGGTATGGGCCAGAGTAATGAAGTGAAGGTGGATTTATCAAACATATCACAACAGGCAGAAGGAAAAATTTTTGATTACCAGGAAAATGATGGATTTCAGGATGGAACTATTGTCAGTTCCGTTCCTTCTTCCAACTTTGCTGATTGCAAATCAACTTCTCTGATAGCTAAAGAGAAAAACAATGACTCTACCTGCATTAAATCTGTCTGGGATGGTCAGGCAGGTGACAATCTGCAGCCTGATTTAGATCCTAGAAAGAGAGTAATTGTGATTGGAGCTGGGCCTGCTGGGTTAACTGCTGCTCGCCACTTGCAACGTCAAGGATTTCCTGTTACTGTGCTTGAGGCTAGGAGTAGGATAGGAGGTCGTGTGTTTACTGATCACTCCTCACTTTCTGTCCCTGTCGATCTTGGAGCTAGCATTATAACAGGTGTTGAGGCTGATGTGGCCACTGAGCGGAGACCAGATCCTTCCTCGTTGATTTGTGCTCAGTTGGGCCTTGAGTTGACAGTGTTGAACAGTGATTGCCCTCTTTATGACATAGTGACAGAACAAAAAGTTCCTGCAGATATGGATGAAGCACTTGAAGCTGAATATAATACCCTTATAGATGACATGGTATTGGTTGTTGCTCAGAAAGGTGAACAAGCAATGAAAATGTCTCTTGAAGATGGTTTAGAATATGCACTCAAGATTCGGCGTACTGCACGCACTGAAAGCAGTGAAGAAACTCAAGAAAACAATTCTGCAGACAGACAATTTGATTCCAAAAAGGACAGTTTTGTGGAAAAAAAACTTGATGAGGAGATTTTGAGCCCTCAGGAAAGGAGGGTTATGGATTGGCACTTTGCTCATTTGGAGTATGGTTGTGCTGCTTCACTTAATGATGTTTCTCTTCCCTACTGGAATCAAGATGATGTGTATGGAGGTTTTGGGGGAGCTCATTGTATGATTAAAGGGGGTTACAGTTCCGTTGTTGAGTCTCTGGGAGAAGGAGTTACAATTCACTTGAACCACATTGTAACAAATGTGTCATATGGAATCAAGGAGCCTGGTCAAAGTTATAAAGTCAAAGTTTCTACAGCAAATGGCAATGAGTTCTTTGGTGATGCTGTCCTTGTTACTGTTCCACTTGGCTGTTTGAAGGCTGAAACTATAGAGTTCTCCCCTCCTTTGCCACAGTGGAAATGTTCTTCTGTTCAGCGTCTTGGTTATGGAGTTCTAAATAAAGTGGCTTTGGAATTTCCTAGTGTATTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAGGAGAGAAACAGTAGAGGTCACTGCTTTATGTTCTGGAATGTCAGGAAAACAGTTGGGGCTCCTGTCCTTATTGCATTAGTGGTTGGTAAGGCAGCCATAGATGGTCAAAGCTTGAGCTCTTCTGATCATGTTAAACATGCATTGAAGGTTCTCCGAAAACTTTTTGGGCAGGATTCAGTTCCAGATCCTGTTGCCTATGTTGTGACTGATTGGGGTAGGGATCCTTTTAGCTATGGTGCTTATTCTTATGTTGCGGTTGGAGCCTCAGGAGAAGACTATGATATATTAGGGAGACCAGTTGATAACTGCTTGTTTTTTGCTGGTGAAGCAACCTGCAAAGAGCACCCAGATACCGTTGGTGGTGCAATGATGAGTGGACTACGAGAGTCTGTTCGCATAATTGACATATTGAGCACTGGAAATGATTATATTGCTGAGGTGGAGGCATTGGAAGCTGCACGGGGACAGTTAGACACTGAAAGGGATGAAGTGAGGGATATAATAAAGAGACTTGATGCAGTAGAACTTTCTAACATAATGTACAAGAACTCTTTAGATGGTGCTCAAATTTTAACCCGGGAAGCTTTGTTAAGGGAAATGTTCTTTAATACGAAAACCACTGCTGGACGCTTGCATGTGGCCAAACAATTGTTAACTCTTCCTGTTGGAAACTTGAAGTCTTTTGCTGGAAGTAAAGAGGGGCTAGCCATTCTCAATTCATGGATACTGGATTCAATGGGAAAGGATGGGACCCAACTCTTGAGGCATTGTTTGCGACTCCTTGTCCGTGTTTCAACTGATCTTCTTGCTGTACGATTGTCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACCAGCCGTGATATTCGTGCTATAGCAAGCCAGTTGGTCAATGTATGGCTTGAAGTTTTTCGCAAGGAAAAAGCTTCTAATGGTGGATTAAAGTTACCAAGACAAACAACTGCAGTAGATTTATCTAAGAGAAAATCTGCCAAAGATTCAGCTTCGGGAAAACCACCTCTGGGCACATATCATGGTACCAATGAGAATAAAGGAGGCTTGCTGAATCCTACATCTGCTGGAAGCAATTCACCTTCCCATGCCCATGTGAAGAAATTGCACAGCAAACAAGGAAGACAGCTGCCATCATATGACTCAAGGCATGAATTCAGTTCTTCCAGGTCCAAAGGTTCAATAGACAGAGTGGTTACAGAGAAGGAGGATAACCACTGTGCTATATCTGAAGAAGAACAGGCTGCTATAGCTGCTGCAGAGGCTGCACGTGTTAAAGCTCTTGCTGCTGCTGAGGCATATGCTTCTGCAGAAGCCAGATCCAATTCGCTGTTACAGCTTCCTAAGATACCCTCATTCCATAAATTTGCTAGACGTGAGCAGTCTTCACAAAATGACGAGTGTGATAGTAGAAAAAGATGGTCAGGTGGTGTTTTTGGAAGGCAAGATTGTATTTCAGAGATCGACTCCAGGAATTGCAGAGTTAGGGATTGGTCTGTTGATTTCTCTGCTGCTTGTGTCAATCTTGATAATTCCAGAATGCCAGTTGATAACCTTTCACAGAGGAGTCATTCAAATGAGATTGCCAGCCATTTGAATTTCAGAGAGCACTCAGGAGAAAGTGCTGCTGGGGACAGCAGTATATATACGAAAGCTTGGATTGACACAGCTGGTGGTGTTGCAATTAAAGATCATCATGCCATTGAGAGATGGCAATCTCAAGCAGCTGCAGCAGATTCTTATTTTTCTAACCCAACCATTCATTTGAAGGACGAGGAGGACTCAAATGCCTGTTCAAAGCTACCAATCTGGAAGCGTGATGGTGTTGCTAATGAGAGCTCTATTTCACAGGTTACTGTAAATAAGGAGGCCCTGAAGAGTCATTCCCGAGCAGCAGATCATATTAAACAGGCTGTTGTGGACTATGTTGCATCACTGCTGATGCCCCTTTATAAGGCAAGAAAACTAGACAAGGATGGATACAAGGCTATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCTACGGATGCAGAAAAAGCCATGACTGTACGCGAGTTTCTAGATTTTAAGCGGAAGAATAAGATTCGCTCCTTTGTGGATATACTGATTGAGAGGCACATGACAATGAAATCAGATGTGAAATCTTAA 5715 0.4261 MEGEDIRSGTRKKRSKKEIGFDSDDDEPIGSIFKLKRSKRKGSGGGEAVREKEDLGGMDDNDTLASFRKRLKGPKRDQGSGFGRGASPALHVSDEELVGLGAKDKDEKGVALVPAGEDMQMEDSSDQHMEDSLSAIFHKAQSSSARKSRGISRQKRGIQKVDSGLCPGGFVETVDSGVESRSGSASGSKLVGGNAMSDDALPQASEPVVTSMVEDQKCVSDCFQEGTVKGECDLDIPGGRNQSNDVYREDGKQFSCVVQAEDISCDSDKKVALQESGVISGDLHKLSSMLNDEIVDTASLSKLGEGERQFTEVRELENRLTDDLVQACNSAPEHDISTSSGEKNVLKSSHIEPLIKSTENALNENNDMVSGKDCQEFSSNGALKLFGCHMEADGAGKSETEFVSDRNFCDYSNLDTKAEVHDFVLGFSPKRNDVTVSGSSMVSNEADLAAHSNHPEKPVEARNIPKDPTASIMKCSSVLDPNQSDGSSLQSSIPDENGNSAEYHASVTDFVDNDGKISSIPRLVRKTKMRKHGDMTYEGDADWEVLINDQALNEIQVMTDVERTLRTRMKHDSSLNTGEDSENVAVVAVSAGLKARKAGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSRDVTRILPLAECGVNDTDFEDGSPRSSLIREVYAFLDQYGYINVGIASQKENVGSSARHCYKLVKEKGFEESLAASMADSEDEVSFLVGQTKMSDASNEVNNGIRKDCNDLTIETTEGMGQSNEVKVDLSNISQQAEGKIFDYQENDGFQDGTIVSSVPSSNFADCKSTSLIAKEKNNDSTCIKSVWDGQAGDNLQPDLDPRKRVIVIGAGPAGLTAARHLQRQGFPVTVLEARSRIGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTEQKVPADMDEALEAEYNTLIDDMVLVVAQKGEQAMKMSLEDGLEYALKIRRTARTESSEETQENNSADRQFDSKKDSFVEKKLDEEILSPQERRVMDWHFAHLEYGCAASLNDVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGVTIHLNHIVTNVSYGIKEPGQSYKVKVSTANGNEFFGDAVLVTVPLGCLKAETIEFSPPLPQWKCSSVQRLGYGVLNKVALEFPSVFWDDAVDYFGATAEERNSRGHCFMFWNVRKTVGAPVLIALVVGKAAIDGQSLSSSDHVKHALKVLRKLFGQDSVPDPVAYVVTDWGRDPFSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLRESVRIIDILSTGNDYIAEVEALEAARGQLDTERDEVRDIIKRLDAVELSNIMYKNSLDGAQILTREALLREMFFNTKTTAGRLHVAKQLLTLPVGNLKSFAGSKEGLAILNSWILDSMGKDGTQLLRHCLRLLVRVSTDLLAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLEVFRKEKASNGGLKLPRQTTAVDLSKRKSAKDSASGKPPLGTYHGTNENKGGLLNPTSAGSNSPSHAHVKKLHSKQGRQLPSYDSRHEFSSSRSKGSIDRVVTEKEDNHCAISEEEQAAIAAAEAARVKALAAAEAYASAEARSNSLLQLPKIPSFHKFARREQSSQNDECDSRKRWSGGVFGRQDCISEIDSRNCRVRDWSVDFSAACVNLDNSRMPVDNLSQRSHSNEIASHLNFREHSGESAAGDSSIYTKAWIDTAGGVAIKDHHAIERWQSQAAAADSYFSNPTIHLKDEEDSNACSKLPIWKRDGVANESSISQVTVNKEALKSHSRAADHIKQAVVDYVASLLMPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRKNKIRSFVDILIERHMTMKSDVKS* 1905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2057 1904 PANTHER FLAVIN MONOAMINE OXIDASE 510 1900 - -
Vra6g2057 1904 SUPERFAMILY FAD/NAD(P)-binding domain 832 1316 IPR036188 -
Vra6g2057 1904 Gene3D - 583 687 IPR036388 -
Vra6g2057 1904 PRINTS Adrenodoxin reductase family signature 835 857 - -
Vra6g2057 1904 PRINTS Adrenodoxin reductase family signature 858 871 - -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 447 466 - -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 1572 1586 - -
Vra6g2057 1904 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 510 1900 - -
Vra6g2057 1904 ProSiteProfiles SWIRM domain profile. 584 684 IPR007526 GO:0005515
Vra6g2057 1904 Gene3D - 836 1312 IPR036188 -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 1532 1551 - -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 477 498 - -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 1 77 - -
Vra6g2057 1904 Pfam Flavin containing amine oxidoreductase 844 1314 IPR002937 GO:0016491
Vra6g2057 1904 Gene3D - 942 1269 - -
Vra6g2057 1904 Coils Coil 1330 1350 - -
Vra6g2057 1904 Pfam SWIRM domain 597 674 IPR007526 GO:0005515
Vra6g2057 1904 SUPERFAMILY FAD-linked reductases, C-terminal domain 1152 1263 - -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 1501 1586 - -
Vra6g2057 1904 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1412 1495 IPR035441 -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 983 1003 - -
Vra6g2057 1904 SUPERFAMILY Homeodomain-like 582 679 IPR009057 -
Vra6g2057 1904 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2057 Vra-Chr6 37191172 37202245 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vra6g2057 Amino_oxidase 2.6e-106 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2057 6 37191172 37202245 Vra6g2057 6 37191172 37202245 ECH