Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2056 ATGATTCTTCATTCAATATTCATGATGGTGATTCTTCGTCCTTATTACCTCACCATTTCACTACTTATTCTCACTTCACCAAACTCATCCTCATACATCAACAAAATGAGACAACCTTTTTCAATCTTCTTCACAATTTTCCTTCTCGCCGTCACACTCCCGCCGCCATGTGCCGTCGTCTCCGCTGGTTCCGGCCAGTGGCAGCTTCTTCAGAAAAGCATCGGCATTGTCGCCATGCACATGCAGCTCCTCCACACCGACACTATCCTCATCTTCGACCGCACCGACTTCGGCCTCTCCAACCTGTCCCTCCCCGGCGGCCGCTGCCGCCACGACCCCAACGAACGGGTTGTCAAAACAGACTGCACTGCCCACTCCGTCGAATACGACGTCGCCTCCAACACCTTCCGCGCCCTTTTCCTTCAAACCAACATATGGTGCTCCTCCGCCTCCGTCGCCGCCGACGGAACGCTGGTTCAAACCGGCGGCTTCAACGACGGCGACAGAGTCGTGCGAACATTTTTCCCTTGCGCCACCTGCGACTGGAAAGAAATCCCCGGCGGCCTCGCCGTGCGCCGCTGGTATGCCACGAACCATAAACTCCCGGACGGGCGCCAAATCATCATCGGCGGCAGAAGACAATTCAACTACGAGTTTTACCCTAAAAGCGACGCCACAGCCAAAAACGCGTACTCCTTACCGTTCCTCGTTCAAACCACAGATCCTTTCGAAGAAAACAACCTCTACCCCTTCGTTTTCCTCAACGTGGATGGCACCCTCTTCATCTTCGCCAACAACAAAGCCATTCTCTTAGACTACACCAAAAACGCCGTCGTTAAAACGTTCCCCATCATTCCCGGCAACGACCCCAGGTGTTACCCCAGCACCGGTTCCGCTGTTCTCTTACCCTTACGCAGTAAAACCCCAAACTTTTCTTTTACCGAAGCTGAGGTTTTAATCTGTGGCGGAGCCCCGAGAGGGGCTTATACTCAAGCCAAAAGAAAGCGTACATTTATCGGAGCTTTGACAACCTGTGCCCGGATTAAAATAACCGACCCGAATCCAACCTGGGTCGTGGAGACAATGCCCGGAGGTAAAGGTAGACTCATGAGCGATATGCTTCTCCTTCCAAACGGCAACGTTTTGATTATTAACGGGGCAGGTTCCGGAAGCGCTGGCTGGGAATACGGGCGCGACCCGGTTCTGGCTCCGTTAGTTTATTACCCGGATAACAATCCGGGGTCGAGGTTTGAGATTCTTAACGCCAGTAACACTCCTCGAATGTATCACTCAACTGCGATTTTGGTTCGTGATGGGAGGGTTCTGGTTGCGGGGAGTAACCCCCACGTGGGGTACAATTTCTCGCACGTGATTTTTCCCACCGAGCTCAGCGTGGAAGCGTTTTCACCGCCGTATTTAGAAGCGGCGTTTCAGAATGTGCGTCCGAGAATCGTTGGTCCGGTGTCGGGGACGAGGGTAGCCTATGGGCAGACAGTGAAGGTTCGGGTCGACGTGGCAGGCGGGTCTTTGGTTCGGAGTTTGGTGCGGGTGACGGTGTTGGCGCCGCCTTTCAACACGCACTCTTTTTCGATGAATCAGAGGATGCTGGTGCTGGAACCCAGCAACGTGACAAACGTTGATGGACCAACGACGTTTGAGTTTGAGGTGACAACACCCGGTTCGCCCGTTCTTGCACCACCCGGTTTTTATCTACTGTTTGTGGTCCACCAGGAAATTCCAAGTGAAGGAATTTGGATCCAAATACTTTAA 1770 0.5305 MILHSIFMMVILRPYYLTISLLILTSPNSSSYINKMRQPFSIFFTIFLLAVTLPPPCAVVSAGSGQWQLLQKSIGIVAMHMQLLHTDTILIFDRTDFGLSNLSLPGGRCRHDPNERVVKTDCTAHSVEYDVASNTFRALFLQTNIWCSSASVAADGTLVQTGGFNDGDRVVRTFFPCATCDWKEIPGGLAVRRWYATNHKLPDGRQIIIGGRRQFNYEFYPKSDATAKNAYSLPFLVQTTDPFEENNLYPFVFLNVDGTLFIFANNKAILLDYTKNAVVKTFPIIPGNDPRCYPSTGSAVLLPLRSKTPNFSFTEAEVLICGGAPRGAYTQAKRKRTFIGALTTCARIKITDPNPTWVVETMPGGKGRLMSDMLLLPNGNVLIINGAGSGSAGWEYGRDPVLAPLVYYPDNNPGSRFEILNASNTPRMYHSTAILVRDGRVLVAGSNPHVGYNFSHVIFPTELSVEAFSPPYLEAAFQNVRPRIVGPVSGTRVAYGQTVKVRVDVAGGSLVRSLVRVTVLAPPFNTHSFSMNQRMLVLEPSNVTNVDGPTTFEFEVTTPGSPVLAPPGFYLLFVVHQEIPSEGIWIQIL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2056 589 CDD E_set_GO_C 477 588 IPR015202 -
Vra6g2056 589 SUPERFAMILY E set domains 477 588 IPR014756 -
Vra6g2056 589 Pfam Galactose oxidase-like, Early set domain 481 588 IPR015202 -
Vra6g2056 589 Gene3D - 61 478 IPR037293 -
Vra6g2056 589 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 57 588 - -
Vra6g2056 589 Pfam Glyoxal oxidase N-terminus 79 323 IPR009880 -
Vra6g2056 589 Gene3D Immunoglobulins 480 589 IPR013783 -
Vra6g2056 589 SUPERFAMILY Galactose oxidase, central domain 113 474 IPR011043 -
Vra6g2056 589 PANTHER SECRETED PROTEIN-RELATED 57 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2056 Vra-Chr6 37181365 37183403 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2056 6 37181365 37183403 Vra6g2056 6 37181365 37183403 ECH
Vra6g2056 6 37181365 37183403 Vra5g1633 5 22766599 22768906 PCT
Vra5g1634 5 22773995 22775831 Vra6g2056 6 37181365 37183403 PCT