Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2053 ATGGAAGGTGTTGATCAAAGTAATATGAAACGAAATGGTAGTGTATTTGGTTCATCATCGGGAGCAAATCTCAGGCCCCCAAATCGATTGAATACTGCTGTGCCTGTTAGTCAATTGGGTGTTGCTGAGAATCAGAAACCCTATGGTATACCACCCTCACACCCTAATACAAATATTTCACCTTCTTCAGCCTATCCTCAGTTTTTTGGCTCCCAATCCCATTCCAATTCGGTTTCTCAGCGTTTGGGTTCTCCCAATTTGAGTTCTGTTTCGTCCCATTCCAGGTCTCTGTCTCAGCCCTCTTTTTTCTCTCTGGATTCCTTGCCCCCATTGAGTCCTTCTCCTTATAGGGAGCCCTCCGTTTCTGACCCAATTTCGATAGATTTGTCTGCTGAGGAAAGCTTGGTTAACCCACATGCCCCTTTGCCTAATCGTGGTCATGCACTTCAGCTTGGCCATTCTCTTCCACCTCGGAAAGGACACAGGCGATCCAGCAGTGATTCCCCTTTGGGAATCTCTGATTTTATTCAGTCTGCCCCTCAGTTGGTTCCCTCCAGGACTTGGAATGATCGTGATGTTTCCAGGGGAGGGAACTCGGGATACGAGAAACCGATTCAGCTAGTGTTAAAGGAACCGATTAAGAGTATGGACCGTGTTGATGGTTTTGGTGGGGAGCCTGTGGTTGGGAGGAAAGAGGATGATTCATTGGATGATTTGTTTAGTGCATACATGAATTTGGACAACATTGATACTCTGAATTTTTCTGGTATGGAAGATAAAGATTTGGATAGCAGAACCAGTGGTTCCAAGACTGTTGAAAGCAGTGATAACGAAGTTGAGAGTCATGCGAATGGGAAAACAACTGGTGCTCAAGGGGCTAGTTCAAGCTGTTCTGAGGACAGAAGGGAAGGAGTGAAGAGGAGTTCTAATGGGGACATTGCACCGGGATCCCGACACCGGAGAAGTTACTCATTGGACAGCTCCATTGGAAATTTTCATATTGGAGATGAATCACCTAAGCTTCCTCCTTTGCAAAACCGGGGTGGTCAACACTCGCCTAGCAATTCAATAGAGGGTAAGACATCTGAAACAAGCATCGAGTTTGGAAATGGTGAATTCAGCTCGGAGGAGCTAAAGAAAATAAAGGAGAATGATAAGCTTGCTGAAATTGCCATGGCTGATCCTAAACGTGCAAAAAGGATTTTGGCCAATAGGCTATCTGCTGCTCGCTCGAAAGAGCGGAAGATGCGATACATTTCTGAATTGGAGCTGAAAGTCCAAACACTTCAGACAGAGACAACCACATTGTCTACTCAATTTACCAAATTACAGATGGACAATTCAGAGCTTAAAAGTGAGAACAATGAGTACAAATTGAGGATTCAAGCCTTGGAACAGCAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGGATGCCGAGGTGCGGCGATTGAGGCGCACGGTCGCAGAACTTGGTGGCGAGTCCCTCCTCTCGAGTCGCATGGCTCAACAGCTTGCTATTAGCCAGCAAATGTTCCCGTTACAGCACCAGCAGCACCCTAACCAGCTTAGACATGGTCAACTGCACAACAGCCATTCCCAGGAACAAACACAGACTCAGTCACAGCGCCAGAATGGCAAAGCAACAGCCTACTGA 1659 0.4635 MEGVDQSNMKRNGSVFGSSSGANLRPPNRLNTAVPVSQLGVAENQKPYGIPPSHPNTNISPSSAYPQFFGSQSHSNSVSQRLGSPNLSSVSSHSRSLSQPSFFSLDSLPPLSPSPYREPSVSDPISIDLSAEESLVNPHAPLPNRGHALQLGHSLPPRKGHRRSSSDSPLGISDFIQSAPQLVPSRTWNDRDVSRGGNSGYEKPIQLVLKEPIKSMDRVDGFGGEPVVGRKEDDSLDDLFSAYMNLDNIDTLNFSGMEDKDLDSRTSGSKTVESSDNEVESHANGKTTGAQGASSSCSEDRREGVKRSSNGDIAPGSRHRRSYSLDSSIGNFHIGDESPKLPPLQNRGGQHSPSNSIEGKTSETSIEFGNGEFSSEELKKIKENDKLAEIAMADPKRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSENNEYKLRIQALEQQSQLKDALNETLDAEVRRLRRTVAELGGESLLSSRMAQQLAISQQMFPLQHQQHPNQLRHGQLHNSHSQEQTQTQSQRQNGKATAY* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2053 552 Coils Coil 440 495 - -
Vra6g2053 552 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 394 457 IPR004827 GO:0003700|GO:0006355
Vra6g2053 552 MobiDBLite consensus disorder prediction 253 367 - -
Vra6g2053 552 CDD bZIP_plant_RF2 397 469 IPR044759 GO:0003700|GO:0006355
Vra6g2053 552 MobiDBLite consensus disorder prediction 515 552 - -
Vra6g2053 552 Pfam bZIP transcription factor 396 454 IPR004827 GO:0003700|GO:0006355
Vra6g2053 552 MobiDBLite consensus disorder prediction 345 367 - -
Vra6g2053 552 MobiDBLite consensus disorder prediction 281 298 - -
Vra6g2053 552 MobiDBLite consensus disorder prediction 50 108 - -
Vra6g2053 552 Gene3D - 395 461 - -
Vra6g2053 552 PANTHER BZIP TRANSCRIPTION FACTOR 69 550 - -
Vra6g2053 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 550 - -
Vra6g2053 552 SMART brlzneu 392 456 IPR004827 GO:0003700|GO:0006355
Vra6g2053 552 Coils Coil 412 432 - -
Vra6g2053 552 MobiDBLite consensus disorder prediction 1 172 - -
Vra6g2053 552 SUPERFAMILY Leucine zipper domain 396 451 IPR046347 GO:0003700|GO:0006355
Vra6g2053 552 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2053 Vra-Chr6 37159446 37162882 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra6g2053 bZIP_1 1.9e-10 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2053 6 37159446 37162882 Vra6g2053 6 37159446 37162882 ECH