Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2049 ATGATGGCTTCCGTAGAAGAAAAGCTTAAAACTGGAGGAGTTGGAGTTGGAGTTGGAGTTGGAGCTGGAGGGGGAATGGTTGTTGGGAGTCAAACTTTGGTGGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCCGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTCCCTCAGGGACACAGTGAGCAGGTGGCGGCTTCTACCAGAAGGACAGCAACGTCGCAGATTCCAAACTACCCCAATCTTCCATCTCAGTTGTTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAAGAGACAGATGAAATCTACGCTCAAATGAGTCTCCAGCCACTGAATTCTGAAAAAGAAGCATTTCCCATATCTGATTTTGGGCTAAAGCCAAGCAAACACCCCACTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACGAGCACACACGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCGTTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATCTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGGTGGAGTTTGTTCGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAACTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCAGTGCTTTCTGCAGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCCGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGCCCTTCAGAATTTGTCATTCCGCTGGCTAAATACAGAAAATCTGTATTAGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGGTGGCCTGATTCTAGATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAACAGAATAGAGTTAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAACGGCCATTGCAATCTGGATATTATGAAAATGAGTGGGGGACTTTGTTAAGAAGGCCTTTTATGAGAGTTCCAGAAAATGGAACTATGGAGCTACCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTCAAACCCCAGATAATTAACAACAATGGAGCATTGTTATCCGCCATGCAACAAGAATCTGCTGCTGCAAGAGGTCCCTTGCAAGAGATGAAGACCACACTTGCACCAGATAGCATGCCGCTTAGAAATCTACACACTCAATCTATCCCTGACCAACCTATTCCCTTAAACATGCAATCACTGTTGAAAAGTGATCAACCTGAAAAGTTGCACACTCTTGCCAAAATTGAGCTGCCTTCTGGGATAGTCACTGACAAACCAAAATTAGAACCTGAGGTATTACCACCTGATCATATGCTTGACTATGCATCCACTTCCATGGAAGGGTGCAACATTGAAAAAGTGGCAACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAATTGACTTTCCATAATCAAAACCAGACTCCTCTCACTCAATCTAGTCCATGGCCTATGCAAGCTCAGATAGAATCATCCATGCCCCATCCTCAAATGATTGACATGGCTCAAGCTGAAACTGCTATGGTAAATAGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCGTATGCTTCCTCCCAACCTTTTGCCGCGCCAAACAGACCAACAGGACCTTTACCTGAGTTGCAAGAACATACGTCACTTCAACCTCAAGTGGTGAATCCTCCTTTGCCTAACCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAACTAGCCTCCATCTGTCAGCCAGGGACGTTCAATGGCATCAATGGCATGCCAAGTCCAAACAGTCTGAGGGACCTTTCAGCTGAGAGCAACAACCAAAGTGAAATTTGCGTCAACGTTGATGTTAGCAACAGTGTAGGTACCACCGTGGTTGATCCTTCTACTTCAAGCACCATTTTGGACGAGTTTTGCACAATGAAGGAGAGAGAGTTTCAGAACCCAAATGATTGCATGATGGGCAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCGGCAAGTCTAGCTGAGTCACACGCCTTTTCTCTCAGAGACATCCCTGACAACTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAACAGCTTTCTGCAGAATAACTCGTGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTACAAAAGGCCGGTTCTGTCGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGTCTTCTGAATGACACTAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTGTTAGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGTGTTCGGTGCATCAGAATTTTATCCCCTACAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTGAACAGTGGAGCTTTACAAGGGATGAATGTTTCATAA 2823 0.4478 MMASVEEKLKTGGVGVGVGVGAGGGMVVGSQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEAFPISDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPDSRWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYYENEWGTLLRRPFMRVPENGTMELPNSMPNLYSEHLMKMLFKPQIINNNGALLSAMQQESAAARGPLQEMKTTLAPDSMPLRNLHTQSIPDQPIPLNMQSLLKSDQPEKLHTLAKIELPSGIVTDKPKLEPEVLPPDHMLDYASTSMEGCNIEKVATNPVNQQGLANQLTFHNQNQTPLTQSSPWPMQAQIESSMPHPQMIDMAQAETAMVNSLLPQLDIDEWMAYASSQPFAAPNRPTGPLPELQEHTSLQPQVVNPPLPNHEVWDHYVKSLKFLSQTDQLASICQPGTFNGINGMPSPNSLRDLSAESNNQSEICVNVDVSNSVGTTVVDPSTSSTILDEFCTMKEREFQNPNDCMMGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDENSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGMNVS* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2049 940 Gene3D - 830 922 - -
Vra6g2049 940 SMART B3_2 159 261 IPR003340 GO:0003677
Vra6g2049 940 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677
Vra6g2049 940 Pfam AUX/IAA family 830 919 IPR033389 -
Vra6g2049 940 ProSiteProfiles PB1 domain profile. 833 917 IPR000270 GO:0005515
Vra6g2049 940 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Vra6g2049 940 SUPERFAMILY CAD & PB1 domains 835 912 - -
Vra6g2049 940 Pfam Auxin response factor 285 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra6g2049 940 PANTHER AUXIN RESPONSE FACTOR 5 40 937 - -
Vra6g2049 940 CDD B3_DNA 158 259 IPR003340 GO:0003677
Vra6g2049 940 Gene3D - 323 395 - -
Vra6g2049 940 SUPERFAMILY DNA-binding pseudobarrel domain 147 288 IPR015300 -
Vra6g2049 940 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 937 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra6g2049 940 Gene3D - 156 260 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2049 Vra-Chr6 37083533 37088796 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra6g2049 AUX_IAA 3.1e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2049 6 37083533 37088796 Vra6g2049 6 37083533 37088796 ECH