Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2045 ATGGGAGTCCCAGCCTTCTACCGGTGGCTGGCCGAGAAGTATCCGATGGTGATTGTGGACGCGATCGAAGAGGAACCAGTCGTCATCGACGGCATTCAAATCCCGGTCGATACGAGCAAGGAGAACCCTAACAACATCGAATACGATAACCTCTACCTCGACATGAATGGCATCATTCATCCCTGCTTTCACCCCGAGGATAGGCCTTCTCCGACGTCGTTCGATGAGGTGTTTGAGTGCATGTTTGACTACATTGACAGGCTGTTCGTTATGGTGCGGCCGCGGAAGCTCCTCTACATGGCTATTGATGGTGTTGCGCCGAGGGCGAAAATGAACCAGCAACGGTCTAGGCGGTTTAGGGCTGCGAAAGATGCAGCTGACGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAAAGCTGAGTCACAGACGTTTGATTCAAATGTCATTACACCTGGAACTGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATGTTCATCTTAGGTTGAACAACGACCCTGGTTGGCAAAATATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAGCATAAGATTATGTCCTATATCCGCCTGCAGAGAAATCTTAATGGTTTTGATCCAAATACACGACATTGCCTATATGGTTTGGATGCCGATTTGATTATGTTGGCATTGGCTACCCATGAAGTTCATTTTTCAATTCTTAGAGAGGTTGTATTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGCCATTTGGCAGCAAACTGTGAAGGAAAGGAAAAAAGAAAGGCAGGAGAGTTTGATGAAAAAGGAGAGGCTATTGTGGCTAAAAAGCCATACCAGTTCCTGAATATTTGGACTCTAAGAGAATACCTAGAGTATGAGATGAGAATACCTAATCCTCCTTTCGAGTTTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGCTTTTTCGTCGGCAATGATTTTCTTCCACATATGCCTACACTAGAGATTCGTGAGATAAACTTGAGCAGGGTGGAGCACTTCATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGGCAAACGGAAAGAATAAAGCGTGAGAAGGCACAGGCAAAAAGGGGAGATGATACCGAGCCTCAATTTCAACCAGAGTCTTTAGTTGCAGTTTCACGATTTCATGGTTCTCGTCTTGCTTCAGCTCCAACACCATCACCATTTCAGCAATCTGGGCATTATAACTCTCAAGTGTCCTCATCAATTAAAAAACACAATAAAGAAACCGCTGAGAGGCCACATAAAGTGGCTAGGTTATCTTCGGGAGCCGCTCTTGCCACTGCTATTGTTGAAGCCGAGAGTAGAGTTGAAATAGAAGCTCAAGATAATAAAGATGAATTGAAAACAAAATTGAAGGAGATACTTCGTGAGAAAGCGGATGTATTCAACTCAAAGAATGCTGAAGAGGACAAGATTAAGTTGGGAGAACCAGGCTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTAAAACTCCTGAGGAACTTGAAGCGATACGGAAAGATGTTGTCTTGAAGTACACTGAAGGCCTATGTTGGGTGATGCACTATTATTACGAAGGTGTTTGTTCTTGGAACTGGTTTTATCCATATCACTATGCCCCCTTTGCGTCTGATCTCAAGGACCTTGGTGAACTTGATATTAGTTTTAAGCTGGGTACCCCATTCAAACCATTTGACCAGCTTCTAGGGGTCTTTCCTGCTGCAAGTTCTCATGCTCTTCCTGAGCCGTATAGGAGACTTATGACTGAACCAAACTCACCTATCATTGATTTTTATCCTGTTGATTTTGAAGTTGACATGAATGGAAAACGCTTTGCTTGGCAGGGTATTGCTAAGTTACCTTTTATTGATGAAGGGCGTCTTCTCGCAGAAGTTGAGAAGATTGAAAATTTTTTAACGCCAGAGGAAAAGCGACGGAATGCTATAATGTATGATTTGCTCTTTGTGAATTCTTGTCACCCTCTCTCTGCATGCATAAGTACACTGGACAACAAGTGTAAAAACATGTCAAACAACGAACGGGCTTTGGTGAAGGAAAAAATCAATCCCATAGAAAGGGATACATGCAGTGGTGGAATGAATGGTTACTTATCTCTATGCGGTGGAGAACCTTGCCCTCCTATCTTTAGGTCTCCTGTTGCAAGCATGGAAGATATCATGGACAATCAAGTTATATGCGCAATATATAGACTTCCAGATGCTCATAAACACATTTCCCGACCACCACAAGGAGTTAAATTTCCTATTAAGTCTGTTACCGTTGGGGATATACAGCCTGACCGTGGTTTATGGCATGAGGATTCAGGTAGGAGACATCACACTGAAAATGGGAGGAGAAACCCTCCAGGATCTTCTGGCCGGGAGCTTGGAGAGCCTGCACACAGACTCATTATGAATTCCTTACAGGCCAAGGTTGACTCCAATGGCTACCGTCACCCACATAATGGACCACCTATATCTTATCCTGCACCAATGGGTCATCGACCACCGGTATCTTCCTATGGTTATGAATCACACCCAGGATACGTTGCAATGCCCCCTGTTCCTTCTCCCTCACTCCATGGCAGACCCCACTTTACACCTTACAATGCTGTCCCTACTGCTCAGCAGTATGGCTATAATCAACAATACCTACCACCCCCCGTAGCATACAATCCTCATCAGCCATCAAATTCTTACGAAAGAAATGACTATCAACACCCTGCTGGATCACATCATTATGAAAGAAATCAGATTCAGGGTACTGGTGGTAGTTTAAGGCATGGATATCAATCGTCAGGATATAATCAGAACGCCAGGTTTATGAACAATACGCAAGGTGGATATGCTAGTCACCATCATGATGTTAGTCATCATCACCAAGTTATTCACCACAGCCAAAACTTCCAACCATCTAGAACCCATCAGAATTGGACTCCTCGAAACAATCAGAGTGGAAACAGGGAATACGGTCATCATTCGTCCAATCAATTTTCTTTATTAGATAGAAGAGGAAACAGGAATCCAATGCCACCACCTGGGTACGATCGCCAATAG 3174 0.437 MGVPAFYRWLAEKYPMVIVDAIEEEPVVIDGIQIPVDTSKENPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFECMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEARLREEFEKEGRKLPPKAESQTFDSNVITPGTEFMAVLSIALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLNGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQDKCFLCGQMGHLAANCEGKEKRKAGEFDEKGEAIVAKKPYQFLNIWTLREYLEYEMRIPNPPFEFDFECIVDDFIFMCFFVGNDFLPHMPTLEIREINLSRVEHFIQAVGSYEDKIFQKRARLHQRQTERIKREKAQAKRGDDTEPQFQPESLVAVSRFHGSRLASAPTPSPFQQSGHYNSQVSSSIKKHNKETAERPHKVARLSSGAALATAIVEAESRVEIEAQDNKDELKTKLKEILREKADVFNSKNAEEDKIKLGEPGWKERYYEEKFSAKTPEELEAIRKDVVLKYTEGLCWVMHYYYEGVCSWNWFYPYHYAPFASDLKDLGELDISFKLGTPFKPFDQLLGVFPAASSHALPEPYRRLMTEPNSPIIDFYPVDFEVDMNGKRFAWQGIAKLPFIDEGRLLAEVEKIENFLTPEEKRRNAIMYDLLFVNSCHPLSACISTLDNKCKNMSNNERALVKEKINPIERDTCSGGMNGYLSLCGGEPCPPIFRSPVASMEDIMDNQVICAIYRLPDAHKHISRPPQGVKFPIKSVTVGDIQPDRGLWHEDSGRRHHTENGRRNPPGSSGRELGEPAHRLIMNSLQAKVDSNGYRHPHNGPPISYPAPMGHRPPVSSYGYESHPGYVAMPPVPSPSLHGRPHFTPYNAVPTAQQYGYNQQYLPPPVAYNPHQPSNSYERNDYQHPAGSHHYERNQIQGTGGSLRHGYQSSGYNQNARFMNNTQGGYASHHHDVSHHHQVIHHSQNFQPSRTHQNWTPRNNQSGNREYGHHSSNQFSLLDRRGNRNPMPPPGYDRQ* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2045 1057 MobiDBLite consensus disorder prediction 922 1057 - -
Vra6g2045 1057 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Vra6g2045 1057 MobiDBLite consensus disorder prediction 387 406 - -
Vra6g2045 1057 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Vra6g2045 1057 Coils Coil 122 142 - -
Vra6g2045 1057 Pfam Xrn1 helical domain 356 802 IPR041412 -
Vra6g2045 1057 Pfam Xrn1 helical domain 325 356 IPR041412 -
Vra6g2045 1057 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Vra6g2045 1057 MobiDBLite consensus disorder prediction 806 824 - -
Vra6g2045 1057 CDD PIN_XRN1-2-like 51 312 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 806 836 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 1002 1042 - -
Vra6g2045 1057 PANTHER 5'-3' EXORIBONUCLEASE 1 357 - -
Vra6g2045 1057 PANTHER 5'-3' EXORIBONUCLEASE 358 980 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 423 463 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 387 410 - -
Vra6g2045 1057 PIRSF Exonuclease_Xrn2 356 1048 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vra6g2045 1057 PIRSF Exonuclease_Xrn2 1 358 IPR017151 GO:0004534|GO:0005634|GO:0006139
Vra6g2045 1057 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Vra6g2045 1057 Coils Coil 482 502 - -
Vra6g2045 1057 Gene3D - 145 380 - -
Vra6g2045 1057 Gene3D - 1 136 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 427 448 - -
Vra6g2045 1057 Gene3D - 586 688 - -
Vra6g2045 1057 MobiDBLite consensus disorder prediction 952 990 - -
Vra6g2045 1057 PANTHER 5'->3' EXORIBONUCLEASE 1 357 IPR027073 -
Vra6g2045 1057 PANTHER 5'->3' EXORIBONUCLEASE 358 980 IPR027073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2045 Vra-Chr6 36991948 37005826 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2045 6 36991948 37005826 Vra6g2045 6 36991948 37005826 ECH