Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2038 ATGGCTCTCTTAACTTCCTTGCCGGAGCACTCCACCACCCCAAAACGCCATAAACGAAAACCACAGCAACAGCAGAAACAGAAACAGAAGGAAAAACAGAAAGCAGCTTCTTCATGGGATCAAATCAAGAACCTCTTAACCTGCAAACAGATGGAAGGGTCGAGGGTTCATGACCCTTCAAAAGGGTACTCAAAGATAGGATCTTCTTGCAGCTCCATATGCAGCTTCAGAGACGTTGTTCATGGGAACACACGTGTGGTGCATAGGTCTGATAACTCTTCACCGGAGAGTAGCTCTCTGGGTCAGGAAACTGGTTTACTCACCAGGAAACCGGTGACCGCTTCTACCCGCTCCACAGCCGCAAAATCAAACGCTGGAGCAACCTACACGTCATCATCTTCTTCCAGGGGAATGCAGTTCAGAAAGCTATCTGGCTGTTATGAATGTCACATGATCATTGACCCTAGCAGGTTACCAGTTGCAAGAAGCACTGTGTGTGCTTGCTCTCACTGTGGTGAGGTCTTCCCTAAAATGGAGAGTTTGGAGCTTCATCAAGCTGTTCGTCATGCCGTTTCGGAGCTGGGACCGGAGGATTCGGGGAGGAACATAGTGGAAATAATATTCAAATCGAGCTGGTTGAAGAAGGATAATCCCATATGCAAGATCGAACGGATACTAAAAGTGCACAATACTCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACTGTAAAGAACCGTGCGCTGGGGAGCACCAAGAAAAACCCCAGGTGCGCAGCCGACGGCAACGAACTCTTGCGGTTCCACTGCACCACCTTAACGTGCGCACTGGGCGCACGTGGGTCATCCTCGCTGTGCGCCTCCGTACCCGGCTGCGGTGTCTGTACAATCATCAGGCACGGATTCCAAGGCGGCGGCGGCGAACACGCGAAGGGAAAGGGCGTGAGGACCACCGCAAGCAGCGGTAGGGCACACGACTCCGTCGTGTGCGGCGACGGCACGCGGAGGGCCATGCTGGTGTGCCGGGTGATTGCGGGGCGCGTGAAGCGCGTGGCGGAGGACACGCCGCCGTCGGAGGAGGAACACGTGTCGGTTGCGTCCTATGATTCTGTAGCCGGGTACGCTGGAATCTACTCGAATCTCGAGGAATTGGTTGTTTTCAATCCAAAGGCTATCCTTCCTTGTTTTGTGGTTATTTACAAAGTGCCTTCGTGTTAA 1221 0.5307 MALLTSLPEHSTTPKRHKRKPQQQQKQKQKEKQKAASSWDQIKNLLTCKQMEGSRVHDPSKGYSKIGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSSLGQETGLLTRKPVTASTRSTAAKSNAGATYTSSSSSRGMQFRKLSGCYECHMIIDPSRLPVARSTVCACSHCGEVFPKMESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDTVKNRALGSTKKNPRCAADGNELLRFHCTTLTCALGARGSSSLCASVPGCGVCTIIRHGFQGGGGEHAKGKGVRTTASSGRAHDSVVCGDGTRRAMLVCRVIAGRVKRVAEDTPPSEEEHVSVASYDSVAGYAGIYSNLEELVVFNPKAILPCFVVIYKVPSC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2038 406 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 23 403 - -
Vra6g2038 406 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Vra6g2038 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 194 IPR013087 -
Vra6g2038 406 Gene3D - 190 403 - -
Vra6g2038 406 MobiDBLite consensus disorder prediction 87 133 - -
Vra6g2038 406 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 23 403 - -
Vra6g2038 406 SUPERFAMILY ADP-ribosylation 191 402 - -
Vra6g2038 406 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2038 Vra-Chr6 36943390 36946657 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g2038 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g2038 6 36943390 36946657 Vra6g2038 6 36943390 36946657 ECH