Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2032 ATGTCGCTAAGCAAGTTTTTCGACTGGAACACTCTTCAAATTTCCGATTCAGAAGCAAGCCTCCGTAATGCAGCCATGGCAGAAGAAGTAGCACCGAATATCCAGCATCTTTTTCCCTACTCAGATGAAAGCTTTTTCCTTTCAAATGCCCTTTTTGAGTACTGCATTGACCCAAATGATGGTTTTATCTGTCCTTCAGATATTCACTCTCCTTTAGATCCTTTCACTTCATTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACAATCCTCTCCCGTGCCCAAAACGCCAAAAGTTCTTCTCCCAGGAACAACCAGAGCTTACCACACCATCCAATCATATAGATGGGTTTGCTAATTGCTACTCTTTTCAATCAGAAGAGACACAACCACAGTTTTTTTGTATGGATGAGGAGAAAGGTAATAAGGAAAGAGTCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACAAATAAGACTCAAGAACTCAGTAAGTTGGTTCCTGGTGGAACAAAAATGAACACTGCTGAGATGCTTCATGCAGCTGCAAAATACGTTAAGTATCTTCAAGCCCAAGTTGAAATGCTTGAACTCATGAACTCATTTGAGCATGAAGATAAAGCAGCACCTCCTTCTGAGATTCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGTGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGTTGTTCAATCCAGACCTACCATGGTTCAGGAACTTAAACAGCTAATTGAAACAGAATCTGAGAAAGAAAAGCAAGATTAA 843 0.4033 MSLSKFFDWNTLQISDSEASLRNAAMAEEVAPNIQHLFPYSDESFFLSNALFEYCIDPNDGFICPSDIHSPLDPFTSFPHHQIFPTHEDYNPLPCPKRQKFFSQEQPELTTPSNHIDGFANCYSFQSEETQPQFFCMDEEKGNKERVISPQSVAARERRRKITNKTQELSKLVPGGTKMNTAEMLHAAAKYVKYLQAQVEMLELMNSFEHEDKAAPPSEILHALVVSPFVQEKLYAVEKCFLPKETVTTLTNLEVVQSRPTMVQELKQLIETESEKEKQD* 281
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2032 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 206 IPR036638 GO:0046983
Vra6g2032 280 Pfam Helix-loop-helix DNA-binding domain 156 196 IPR011598 GO:0046983
Vra6g2032 280 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 265 - -
Vra6g2032 280 Gene3D - 149 210 IPR036638 GO:0046983
Vra6g2032 280 SMART finulus 152 201 IPR011598 GO:0046983
Vra6g2032 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Vra6g2032 280 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 28 265 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra6g2032 Vra-Chr6 36911369 36912413 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g2032 HLH 6.6e-07 No_clan