Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g2030 ATGGCTGAACTCGAACTAGCTCCCCAACAAGTCCTGCCATCTAAAACCGACCAACAAACCAAAACTGAGACTGTGTCGTTTTTTGGCTTGTTTGCTACAGCAGATTCAACTGACTGTGTCTTGATGTTCCTCGGAAGTGTCGGTTCTTGTCTCCATGGTGCTGCTCTTCCTGTTTTCTTCATTTTGTTTGGTCGCATGATCGACTCTTTGGGACATCTTTCTAACAATCCTCACAAATTGTCCTCGCGAGTTTCTGAGCATGCTTTGTATTTGCTCTACCTTGGTGGAGTTGTTCTGGTATCTGCTTGGATGGGTGTAGCGTTCTGGATGCAAACAGGGGAGAGGCAAACCGCACGTTTGCGTTTGAAATATTTGCAGGCAGTGCTAAAGAAGGATATTAATTTCTTCGACAACGAAGCAAGGGATGCTAATATCATTTTCCACATCTCAAGTGATGCAATACTGGTACAAGATGCTATTGGTGACAAGACAGGCCACGCCATTCGTTATCTTTCTCAATTCATCGTTGGATTTGCCATTGGATTTACCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCACTGATAGCTATAGCTGGGGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAGGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAATCGGTTCATACTCAAAGTCTCTTGATAATGCTCTGAAACTGGGCAAGAAGGGTGGTCTGGCAAAAGGGGTTGGAGTAGGCTTCACGTATGGCTTGTTATTTTGTGCTTGGGCGTTGCTTCTATGGTATTCTAGCATACTCGTGAGGCATCACAAGACAAATGGAGGAAAAGCGTTCACAACAATAATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAATCTTGGTTCCATTGCCAAAGGGCGTGCTGCTGCAGCCAACATCATGAACATGATTGCGTCCGCTTCAAGCAATTCTAAGAGGTTGGATGATGGCACTTTCGTGCCACTGGTTGCTGGGGAAATTGAATTTCGTGAGGTCTGTTTTTCTTACCCCTCAAGAACCAATATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCCAGTGGTTCCGGAAAGAGCACGATTGTTTCACTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACATAAAGAATCTCCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTGAGTCAAGAACCAGCACTGTTTGCAACAACAATAGCTGGAAATATTTTGTTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTTCCATGGCTGCAAATGCTCATTCTTTTATTCAAGGATTGCCTGATGGTTATCAAACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGGCAAAAGCAAAGAATTGCCATTGCAAGAGCAGTGATCAGAAACCCAAAAGTATTGCTTCTAGACGAGGCCACAAGCGCTCTAGATTCTGAATCAGAGCTCATTGTCCAACAGGCATTGGAAAAAATAATGTCAAACAGAACAACAATAGTTGTTGCTCATAGGTTGTCCACTATACGCGATGTAGATACAATTATCGTGTTGAAGAACGGCCAGGTGGTTGAAAGTGGAACTCATTTGGAATTGATGTCCAACAATGGAGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAAAACCTCTCAAACTCAAGATCAATATCTCGCTCTGAAAGTTCAAGAAATTCTAGTTTTAGAGAACCTTCAGAGAACATGACCTTAGAGGAGCAGCTGATGTTGGACACGACAGGAGAAATGCAATCAAGTGAACAACACTTGCCATCAAAGACAACCTCAGCTCCGACAATATTGGATTTACTGAAACTGAATGCTCCAGAATGGCCTTATGCAATACTTGGGTCGGTAGGTGCAATATTGGCTGGCATGGAAGCCCCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGAGTTCTAAAATCAAGCAAGAAGTAGATCGGGTCGCTTTTATATTTCTTGGAGTGGCTCTTATTACTATACCTATTTATCTATTGCTTCACTACTTTTATACATTGATGGGAGAAAATCTCACTGCCCGTGTACGTTTGTTAATGTTCTCAGCTATTCTCAACAATGAAATTGCATGGTTTGATAAGGATGAGAACAACACTGGCTCACTCTCAGCCATGCTAGCTGCTGATGCAACACTAGTGAGAAGTGCTCTGGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTCACAGCTTTTGTTATTGGCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAATTATTTCTGAAGGGGTTTGGAGGAGATTACAGCCATGCTTACTCTAAAGCAACTTCATTGGCTCGTGAAGCTATTGCCAACATACGAACTGTTGCTGCTTTTGGCGCCGAAGATCGAATTTCAATCCAGTTTGCATCTGAATTGAATAAACCTAACAAAGAAGCTCTTCTACGGGGCCACATATCAGGTTTTGGCTATGGCATAACCCAGCTATTGGCTTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTGAAGGGATCACAGGCACTGGGATCGGTTTTTGGCATTCTCCAAAGGAGAACATCCATCACCCCAGATGATCCCAACTCAAAGATTGTAACTGTTGTCAAAGGAGAGATAGAGTTTAGAAATGTAAGCTTCAAGTACCCTATGAGACCTGACATAACCATCTTTCAGAACTTGAATCTCAGAGTCTCAGCAGGCAAGAGTCTGGCAGTAGTGGGTCAAAGTGGTTCAGGGAAAAGCACGGTGATTTCATTGGTAATGAGGTTTTATGACCCTGATTCTGGATCAGTCCTTATAGATGAATGTGATGTCAAAAGCCTAAACCTGAGATCCTTAAGGCTGCGCATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCAACCACAGTTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATCAGCAGGATGCAAGAAGGGTACCACACTGAGGTAGGTGAGAGAGGGGTGCAGTTGTCAGGGGGACAAAAACAAAGAGTTGCAATTGCTAGAGCTATTTTGAAAGATCCATCCATTCTTTTGCTGGATGAAGCCACAAGTGCTCTAGACACAGTATCAGAGAGGCTGGTCCAAGAGGCTCTAGATAAACTAATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTATCAACTGTTCGTGAAGCTGACAGCATTGTAGTGCTGCAAAATGGCAGCGTTGCCGAAATGGGAAGCCATGAGAGGCTGATGGCCAAACCTCGAAGCATCTATAAGCAATTGGTTAGTCTACAGCATGAATCACGAGACCAAGAAAACCATTGA 3741 0.4341 MAELELAPQQVLPSKTDQQTKTETVSFFGLFATADSTDCVLMFLGSVGSCLHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRVSEHALYLLYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLQAVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAIGSYSKSLDNALKLGKKGGLAKGVGVGFTYGLLFCAWALLLWYSSILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKRLDDGTFVPLVAGEIEFREVCFSYPSRTNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDIKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQASMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVIRNPKVLLLDEATSALDSESELIVQQALEKIMSNRTTIVVAHRLSTIRDVDTIIVLKNGQVVESGTHLELMSNNGEYVNLVSLQASQNLSNSRSISRSESSRNSSFREPSENMTLEEQLMLDTTGEMQSSEQHLPSKTTSAPTILDLLKLNAPEWPYAILGSVGAILAGMEAPLFALGITHILTAFYSPQSSKIKQEVDRVAFIFLGVALITIPIYLLLHYFYTLMGENLTARVRLLMFSAILNNEIAWFDKDENNTGSLSAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKEALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGILQRRTSITPDDPNSKIVTVVKGEIEFRNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGSVLIDECDVKSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMQEGYHTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVREADSIVVLQNGSVAEMGSHERLMAKPRSIYKQLVSLQHESRDQENH* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g2030 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g2030 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
Vra6g2030 1246 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524
Vra6g2030 1246 Gene3D - 989 1246 IPR027417 -
Vra6g2030 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Vra6g2030 1246 SMART AAA_5 1026 1212 IPR003593 -
Vra6g2030 1246 SMART AAA_5 392 578 IPR003593 -
Vra6g2030 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1237 IPR027417 -
Vra6g2030 1246 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Vra6g2030 1246 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Vra6g2030 1246 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 448 565 - -
Vra6g2030 1246 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 26 467 - -
Vra6g2030 1246 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 544 1237 - -
Vra6g2030 1246 SUPERFAMILY ABC transporter transmembrane region 665 977 IPR036640 GO:0005524|GO:0016021
Vra6g2030 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g2030 1246 Pfam ABC transporter transmembrane region 678 950 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g2030 1246 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra6g2030 1246 Gene3D ABC transporter type 1, transmembrane domain 29 968 IPR036640 GO:0005524|GO:0016021
Vra6g2030 1246 Gene3D - 356 603 IPR027417 -
Vra6g2030 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Vra6g2030 1246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 448 565 IPR039421 -
Vra6g2030 1246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 544 1237 IPR039421 -
Vra6g2030 1246 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 467 IPR039421 -
Vra6g2030 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Vra6g2030 1246 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Vra6g2030 1246 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Vra6g2030 1246 MobiDBLite consensus disorder prediction 610 631 - -
Vra6g2030 1246 SUPERFAMILY ABC transporter transmembrane region 38 339 IPR036640 GO:0005524|GO:0016021
Vra6g2030 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Vra6g2030 1246 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g2030 Vra-Chr6 36889576 36895052 Dispersed/Transposed